KEGG   Oxynema aestuarii: HCG48_05370
Entry
HCG48_05370       CDS       T06528                                 
Name
(GenBank) RNA-binding protein hfq
  KO
K03666  host factor-I protein
Organism
oxy  Oxynema aestuarii
Pathway
oxy02024  Quorum sensing
oxy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oxy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HCG48_05370
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    HCG48_05370
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oxy03019]
    HCG48_05370
   03036 Chromosome and associated proteins [BR:oxy03036]
    HCG48_05370
Messenger RNA biogenesis [BR:oxy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     HCG48_05370
Chromosome and associated proteins [BR:oxy03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    HCG48_05370
SSDB
Motif
Pfam: Hfq_1 Hfq
Other DBs
NCBI-ProteinID: QIZ73614
UniProt: A0A6H1U445
LinkDB
Position
1354886..1355101
AA seq 71 aa
MMPDLDTNLPSIRQIQSLIKEKKEVELKVVTGDLIAGKIFWQDSECLSVLDHYDRQTVIW
KHAIVFIQPKA
NT seq 216 nt   +upstreamnt  +downstreamnt
attatgcctgacttagatactaatcttccgagcattcgccaaattcaaagtttgatcaaa
gaaaaaaaagaggtcgaactcaaagtcgttaccggggatctgatcgcggggaaaattttt
tggcaagatagcgaatgtctctcggttctcgaccattacgaccgacagacggtgatctgg
aaacacgcgatcgtcttcattcagccgaaggcataa

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