Oxynema aestuarii: HCG48_05370
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Entry
HCG48_05370 CDS
T06528
Name
(GenBank) RNA-binding protein hfq
KO
K03666
host factor-I protein
Organism
oxy
Oxynema aestuarii
Pathway
oxy02024
Quorum sensing
oxy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCG48_05370
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HCG48_05370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oxy03019
]
HCG48_05370
03036 Chromosome and associated proteins [BR:
oxy03036
]
HCG48_05370
Messenger RNA biogenesis [BR:
oxy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
HCG48_05370
Chromosome and associated proteins [BR:
oxy03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
HCG48_05370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq_1
Hfq
Motif
Other DBs
NCBI-ProteinID:
QIZ73614
UniProt:
A0A6H1U445
LinkDB
All DBs
Position
1354886..1355101
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AA seq
71 aa
AA seq
DB search
MMPDLDTNLPSIRQIQSLIKEKKEVELKVVTGDLIAGKIFWQDSECLSVLDHYDRQTVIW
KHAIVFIQPKA
NT seq
216 nt
NT seq
+upstream
nt +downstream
nt
attatgcctgacttagatactaatcttccgagcattcgccaaattcaaagtttgatcaaa
gaaaaaaaagaggtcgaactcaaagtcgttaccggggatctgatcgcggggaaaattttt
tggcaagatagcgaatgtctctcggttctcgaccattacgaccgacagacggtgatctgg
aaacacgcgatcgtcttcattcagccgaaggcataa
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