Polycladomyces abyssicola: JIR001_02020
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Entry
JIR001_02020 CDS
T07192
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pabs
Polycladomyces abyssicola
Pathway
pabs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pabs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JIR001_02020 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pabs03021
]
JIR001_02020 (rpoA)
03400 DNA repair and recombination proteins [BR:
pabs03400
]
JIR001_02020 (rpoA)
Enzymes [BR:
pabs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JIR001_02020 (rpoA)
Transcription machinery [BR:
pabs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JIR001_02020 (rpoA)
DNA repair and recombination proteins [BR:
pabs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JIR001_02020 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
HHH_5
OPA3
SAM_EPH
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
BCU80419
UniProt:
A0A8D5UCB6
LinkDB
All DBs
Position
200515..201459
Genome browser
AA seq
314 aa
AA seq
DB search
MIEIEKPKIEAVEMSEDNRYGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVTSIQIDG
VLHEFSTIPGVVEDTTEIILNLKKLALKIHSDEEKVLEIDVEGGGEVKAGDIRADSDVEV
LNPDLHIATLADDGHLRIRMTANRGRGYVPAERNKKEDQPIGVIPIDSIYTPIERVNYKV
ENTRVGQVTNYDKLTLEVWTNGSLRPDEAVSLGAKILTEHLMLFVGLTDEAKEAEIMVEK
EEDKKEKVMEMTIEELDLSVRSYNCLKRAGINTVQELTQKTEEDMMKVRNLGRKSLEEVQ
EKLAELGLSLRKEE
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgattgaaatcgaaaaaccgaaaatcgaagccgtggaaatgagtgaagataaccggtac
ggcaagtttgtggtggagccccttgaacgggggtacggcaccacgctgggtaactccctc
cgccgcattttgctgtcctcccttccgggtgcggcagtcacctccatccagatcgacgga
gtcttgcatgagttctccaccattccgggtgttgtcgaagatactacggagatcattttg
aacctgaaaaagctagcattgaagatccattcggacgaagaaaaagtgctggagatcgat
gtggaaggcggcggagaagtcaaagcgggcgacattcgagctgacagcgatgtcgaggtg
ttgaacccggatttgcacatcgccactctggccgatgacggccatttgcgaatccggatg
actgccaaccgcggacgtggatatgttccggccgaacggaacaaaaaagaagatcaaccg
atcggtgtgattccgatcgattcgatttacaccccgatcgagcgggtgaactacaaagtt
gagaatacgcgcgtgggtcaagtgaccaactacgacaagctgacgctggaagtgtggacc
aacggcagcttgcgtccggatgaagcggtcagcttgggcgccaagattcttaccgaacac
ctgatgttgtttgtcggcctgacggatgaagccaaagaagccgagatcatggtagagaaa
gaagaagataaaaaagaaaaagtcatggaaatgaccatcgaggagctggatctgtccgtc
cggtcttacaactgcctgaagcgggccggcatcaacactgtgcaagagctgacgcaaaaa
acggaagaagatatgatgaaagtccggaacctggggcggaagtccctggaggaagtgcag
gagaaattggccgaactgggtctctccttgcgcaaagaagagtaa
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