Pediococcus acidilactici: A4V11_04580
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Entry
A4V11_04580 CDS
T04512
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
paci
Pediococcus acidilactici
Pathway
paci03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paci00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A4V11_04580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paci03021
]
A4V11_04580
03400 DNA repair and recombination proteins [BR:
paci03400
]
A4V11_04580
Enzymes [BR:
paci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A4V11_04580
Transcription machinery [BR:
paci03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A4V11_04580
DNA repair and recombination proteins [BR:
paci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A4V11_04580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AOW74331
UniProt:
A0AAN5YAB7
LinkDB
All DBs
Position
complement(928297..931896)
Genome browser
AA seq
1199 aa
AA seq
DB search
MAGHLVKYGKHRTRRSYARIKEVLDLPNLIEIQTDSYQWFLDEGLREMFNDIMPIEDFAG
KLSLEFVDYQLLEPKYTVDEAREHEANYSAPLHVTLRLTNHETGEIKSQDVFFGDFPLMT
EQGTFIINGAERVIVSQLVRSPGVYYNLDVDKNNRNIWGATVIPNRGAWLEYETDAKEVS
YVRIDRTRKIPMTELVRALGFGSDEEIIDIFGGSDSLDFTLDKDVHKNPEDSRVAESLKD
IYERLRPGEPKTADSSRSLLTARFFDPKRYDMAPVGRYKVNKKLSLKTRLLGQTLAETLA
DPDTGEVLAQKGDVVDKDVMKKLAPYLDRQDFKMVTYQPSDEAVVPEPMTIQVIKIQDPN
DPERELKMIGNGNIDLKLKHITPADIIASINYFFLLQQGIGSTDDIDHLGNRRIRSVGEL
LQNQFRIGLARMERVVRERMSIQDAETVTPQQLINIRPVVAATKEFFGSSQLSQFMDQTN
PLGELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLASYG
KINRYGFIETPYRRVSWKDHKVTDRIDYLTADEEDQFVIAQANSPLNDDGSFVDDVVMAR
HESDNIETSIENVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLLDPHA
PLIGTGIEYKAAHDSGVALLCQHPGVVEYVDAREIRVRRDDGALDTYKLMKFRRSNGGKN
YNQRPIVRVNDKVDADDVLADGPSMELGELALGQNPLIAFMTWQGYNFEDAIAINERLVR
DDVYTSIHIEEYESEARDTKLGPEEMTREIPNVGEDALRNLDQDGIVRIGAEVQDGDILV
GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKIFTRENGDELSP
GVNMMVRVYIAQKRKLQVGDKMAGRHGNKGTVSVVIPEEDMPYMPDGTPIDIMLSPMGVP
SRMNIGQVLELHLGMAARNLGIHMTTPVFDGARDEDIWEAVAEAGMDSDAKSVLYDGRTG
EPFEQRVAVGVMHYMKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEILTYKSDDIVGRVKTYEAIVKGESIPRPGVPESFRVLVKELQALGLDMK
VLGEDKQEVELRDMDEDDDEVVNVDALSKYAEKQKAANANEADSSTTESTPVETENNQN
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatttagttaagtatggtaaacatcgtacgcgccggagctatgcacgaatt
aaagaagtactcgatttaccaaacttaatcgagattcaaacggattcgtaccaatggttc
ttagacgaaggtcttcgggaaatgttcaacgacattatgccgattgaagattttgccggt
aaattgtcacttgagttcgttgactatcagttgttagaaccaaagtataccgttgatgaa
gctcgtgaacatgaagcaaactactctgcgccattgcacgttacgttgcggttgactaac
catgaaacgggtgaaatcaagtctcaagacgtcttctttggtgacttcccattaatgacg
gaacaaggaactttcattattaatggtgctgaacgggttattgtttcacaattggttcgt
tcaccaggggtttattacaacttagacgttgacaaaaataatcgtaatatttggggcgca
acggtaattcctaaccggggtgcttggttagaatatgaaactgatgctaaggaagtttct
tacgttcgtatcgaccggactcggaagattccaatgacggaattagttcgggcacttggt
tttggttctgacgaagaaatcattgatatctttggtgggtcagacagtttagactttacc
cttgataaagatgtgcataaaaatccggaagattcgcgagttgcggaatccttaaaggac
atttatgaacgtcttcgtcctggtgaacctaaaactgcggacagttcgcggagcttattg
actgcgcgcttctttgatccaaagcgttacgatatggcaccagttggtcgttacaaggtt
aacaagaagttaagcttgaagacccgcttgctaggtcaaaccctcgctgaaacccttgct
gacccagatacaggggaagtattggctcaaaagggtgacgttgttgacaaagacgtaatg
aagaagttggcaccttaccttgatcgtcaagatttcaagatggttacttaccaaccttct
gatgaagcggtagttccagaaccaatgacgattcaagtaattaagattcaagaccctaac
gatcctgaacgtgaattaaagatgatcggtaatgggaacattgatttgaagctcaagcac
attactcctgccgatattattgcttcaattaactacttcttcctattacaacaaggaatt
ggtagcactgatgatattgatcacttgggtaaccgtcggattcgttcagttggtgaattg
ttacaaaaccaattccgaattggtttagctcggatggaacgggttgttcgggaacggatg
tcaatccaagatgccgaaaccgttacgccacaacaattaattaatattcgtccagtagtg
gcagcaactaaagaattctttggttcttcacaattgtcacagttcatggatcaaaccaac
ccgcttggcgaattgtcgcataagcgtcgtctttcagctcttggaccaggtggtttaact
cgtgaccgtgctggatacgaagtccgggacgttcactatactcactatggtcggatgtgc
ccaattgaaactcccgaaggtcctaatatcggattgatcaataacttggcttcttacgga
aagattaaccgatacggctttattgaaacaccataccgccgggtttcttggaaagatcac
aaggtaaccgaccggatcgattacttgactgctgacgaagaagaccaattcgttatcgcc
caagcgaactcgccgttaaatgacgatggttccttcgtggatgacgtagttatggctcgt
catgaaagtgacaacattgaaaccagcattgaaaacgtcgactacatggacgtttcacct
aagcaagtagttgcggttgcgacggcatgtattcctttcttggaaaacgatgactctaac
cgtgctttgatgggtgcgaacatgcagcgtcaggcggttcctttgcttgaccctcacgca
ccattgattggtactggtattgaatataaagctgcacacgactcaggagttgctttgtta
tgtcaacatcctggggttgttgaatacgttgatgctcgtgaaattcgggttcgtcgtgat
gacggtgcactagacacttacaaattgatgaagttccgtcgttctaacggcggtaagaac
tacaaccaacgtccaattgtgcgggttaacgacaaggttgacgccgacgatgtattggct
gatggtccatcaatggaattaggtgaattagcgctcggtcaaaacccattgattgccttc
atgacgtggcaaggttataacttcgaagatgcgattgcgattaacgaacgcttggttcgt
gacgatgtttatacttctattcatattgaagaatatgaatcagaagcgcgtgacacgaag
ttaggaccggaagaaatgacccgtgaaattccaaacgttggtgaagatgcattgcgtaac
cttgaccaagacggaattgtgcggattggtgctgaagtccaagatggcgacatcttagtt
ggtaaagttactcctaaaggggtgacagaactttccgctgaagaacggttgttacacgct
atctttggtgaaaaggctcgtgaagttcgcgatacatccctccgtgtgccacatggtggc
ggcggtatcgtccaagacgtgaagatcttcactcgggaaaatggtgatgaactttctcct
ggcgttaacatgatggttcgagtttacattgctcaaaaacgtaagcttcaagttggggat
aagatggccggccgtcatggtaacaagggtaccgtttcggtagttattccagaagaagat
atgccatacatgccagatggtactccaatcgacattatgcttagtccaatgggtgtgcct
tcccgtatgaatatcggacaagttttggaattgcatttgggaatggcagctcggaaccta
ggaattcacatgactacacctgtttttgatggtgctcgtgacgaagatatttgggaagcc
gttgccgaagctggtatggactccgatgcgaagtctgtattgtacgatggccgaacaggt
gaaccgtttgaacaacgggttgcggttggtgtcatgcactacatgaagctcgcccacatg
gttgacgataagattcatgctcgttctattggaccttactcattagttacgcaacaacca
cttggtggtaaagcacaatttggtggacagcgttttggtgaaatggaagtttgggccctt
gaagcttatggtgcagcttacacattgcaagaaatcttaacttacaagtctgatgatatt
gtgggacgggttaagacttatgaagcaatcgtgaagggtgaatcaattcctcgtcctggc
gtaccggaatcattccgcgtgttggttaaggaattgcaagctttaggactagacatgaag
gttcttggagaagataagcaagaggttgaacttcgtgatatggacgaagatgatgatgaa
gttgtcaacgttgatgctctaagcaagtatgccgaaaagcaaaaggcggctaatgctaac
gaagctgactcgtcaacaacggaatctactcctgtggaaactgaaaacaaccaaaattaa
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