Candidatus Pseudomonas adelgestsugas: C3B55_00270
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Entry
C3B55_00270 CDS
T05857
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pade
Candidatus Pseudomonas adelgestsugas
Pathway
pade03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pade00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C3B55_00270 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pade03021
]
C3B55_00270 (rpoB)
03400 DNA repair and recombination proteins [BR:
pade03400
]
C3B55_00270 (rpoB)
Enzymes [BR:
pade01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C3B55_00270 (rpoB)
Transcription machinery [BR:
pade03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C3B55_00270 (rpoB)
DNA repair and recombination proteins [BR:
pade03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C3B55_00270 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RickCE_cat
Motif
Other DBs
NCBI-ProteinID:
QAX81625
UniProt:
A0ABX5R7K2
LinkDB
All DBs
Position
480167..484240
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGVAKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVSYRLGEPAFDVKECVLRGVTYAVPLRVKIRLIIFDKELSNKSIKN
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDET
LSLELIATRLRGEIAVLDIKDTKGKVIVEAGRRITARHINQIEKASIKSLQVPLDYVLNR
TTAKAIVHPATGEILAECNTELNTEILAKIAKAKVVRIETLYTNDIDCGPFISDTLKIDS
TNNQLEALVDIYRMMRPGEPPTKDAAENLFNNLFFSPERYDLSAVGRMKFSRRIGRTEIK
GSGVLCKEDIIAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESDGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASAMMNDNKVLIDELVAVRHLNEFTVKAPKDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADRPLVGTGMERNVARDSGVC
VVARRGGVINSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
CVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVSVGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTNGTIIDVQIFTRDGVERDARALSIERAQLDE
IRKDLNEEFRIVEGATFERLRSALVGRKVESGVGLKKGQDVTNESLDGLERGQWFKLRMA
EEALNKQLEKAQAYIINRRQLLDDTFEDKKRKLQQGNDLAPSVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPYDTNGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEDQRKIIDLRKFLHKIYNEIGGRNEKLDTFSDLEILNLAKNLRYGVPMATP
VFDGAKESEIKAMLKLADLPDSGQMQLFDGRTGNQFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgtaaagattttagcaagttaccagac
gtcatggatgttccgtatctgttggctattcagctggattcgtatcgtgaattcttacag
gctggagtggctaaagatcagtttcgcgatgttggcctgcatgcggctttcaaatcagtt
tttcctatcattagctactccggtaatgctgcgttggaatacgtaagttatcgcttaggc
gagccggcatttgatgtaaaagaatgcgtattacgtggtgtaacatacgctgtacctttg
cgggtaaaaattcgcctgattatttttgacaaagaattgtcgaacaaatcaattaaaaac
atcaaagaacaagaagtctacatgggtgaaataccactgatgactgaaaatggtacattc
gttattaacggtaccgagcgcgttatcgtttcccagttacaccgttcccctggcgtattt
ttcgaccacgaccgcggtaagacgcatagctctggtaagctattatactctgcacggatt
attccgtatcgcggttcgtggttagactttgaatttgacccgaaagattgcgtatttgtg
cgtatcgaccgtcgtcgcaagctgccagcttcagtactattacgcgcgctcggttatact
actgagcaagttctggacgctttctataccacgaatgtattcagtctaaaagatgaaact
cttagcttggaattaattgcaactcgtttgcgtggtgaaattgctgttctggatattaaa
gatacaaaaggtaaagtaattgttgaagccggtcgccgtattactgcgcgccacatcaat
cagattgaaaaagcctccattaaatcgttgcaggtacctctagactatgttctaaatcgc
actaccgccaaggctatcgttcatccagctacaggcgaaatattagcagagtgcaacact
gagctgaataccgaaatcttagcaaaaatcgctaaagccaaagttgttcgtattgaaact
ctatatactaacgatattgactgcggtccgtttatctctgatacgcttaagatagactct
accaataaccaactagaagcgttagtcgatatttatcgcatgatgcgtcctggtgaacca
ccaacgaaagacgctgccgagaatttatttaataacttattctttagccccgagcgttat
gacttatctgcggtcggcaggatgaagtttagtcgtcgtattggccgtactgagattaaa
ggttcaggggtgctgtgtaaggaggatattattgcagtcctgaagactctagtcgatatc
cgtaatggtaaaggtattgtcgatgatatcgatcatctaggtaaccgtcgtgttcgctgc
gtaggagagatggctgagaaccagtttcgcgttggtctagtacgtgtagaacgtgcagtt
aaagagcgtttgtcgatggcggaaagcgatggcttaatgccgcaagatctgattaatgct
aagccagtagctgcagcagtcaaagaattctttggctctagccagctctcgcagtttatg
gatcaaaataatccgctttccgaaattacccataagcgtcgcgtctctgcacttggccct
ggcggtttaacccgtgagcgcgcaggttttgaggttcgtgatgtacacccgacgcactat
ggtcgtgtttgccctattgaaacgccagaaggtccaaatatcggtttgatcaattctctg
gctgcttatgcacgcaccaatcagtatggctttctcgagagtccataccgtgtggtgaaa
gatgctcttgtcactgacgagattgtgtttctatccgctatagaagaagctgatcacgta
atcgctcaggcctcagcgatgatgaatgacaacaaagttctaatcgatgagctagtagct
gttcgtcatttaaacgagttcactgtcaaggcgccgaaagacgttaccttaatggatgtt
tcgccaaaacaggtagtttcagttgctgcgtcactaatcccatttttagagcatgatgac
gctaaccgtgcattgatggggtctaatatgcagcgtcaagctgtaccaaccttacgcgct
gataggcctctagtaggtactggtatggagcgcaatgtggcgcgtgactccggcgtatgt
gtcgtcgctcgccgtggtggtgtgatcaactctgttgatgccagccgtattgtagttcgt
gttgcagacgatgaagttgaaaccggtgaagccggtgtcgacatctataacctgaccaaa
tacactcgttcaaaccaaaacacctgcatcaaccagcgcccgttagtgagcaagggtgat
tgcgttcagcgcagcgatattatggctgatggcccatccactgatatgggtgagttggct
ctaggtcagaatatgcgtatcgcatttatggcatggaatggcttcaactttgaggactcc
atctgcttgtctgagcgtgttgttcaagaagaccgctttaccacgattcatattcaggag
ctgacttgtgtagcacgtgatactaagcttgggcctgaggaaatcactgcagatattcca
aacgtaggtgaggctgcactaaataagttagatgaagctggtattgtttatgtgggtgct
gaggttagcgtaggtgacatcctggtcggcaaggtcactccaaaaggtgagactcaactg
acgccagaggaaaaactgttacgcgctattttcggtgaaaaagctagcgacgttaaagac
acctccttacgagtacccactggcaccaatggtactatcatagatgtacaaatttttact
cgtgatggtgtggagcgtgatgctcgtgctctctccatagagagagctcaactcgacgaa
atccgcaaagatttaaacgaagagtttcgtatcgttgaaggtgcgacctttgaacgcctg
cggtctgctctggtaggccgcaaggtcgaaagcggtgtagggctcaagaaaggtcaagac
gtaaccaacgaaagccttgacggtcttgagcgtggccagtggtttaaactacgcatggct
gaagaggcgctgaataagcagcttgaaaaagcccaggcctatataattaatcgtcgtcaa
ctgttagatgatacgttcgaagacaaaaagcgtaaactgcagcagggtaatgacttggct
ccaagcgtgttaaaaatcgttaaggtttatctggcaattcgtcgacgtattcagcctggt
gataagatggctggtcgtcacggtaataaaggtgtggtctctgtgattatgccagttgag
gatatgccgtatgataccaatggtactcctgtcgacgttgtcctcaatccattaggtgta
ccttcgcgtatgaacgttggtcagatccttgaaactcacttgggtcttgcagctaaaggt
ttaggcgaaaaaatcaaccgtatgatcgaagatcagcgtaagattatcgacctgcgtaag
ttcttgcataaaatttacaatgagattggcggtagaaacgaaaagttagacactttctct
gatctggaaatcctaaatctagcgaagaacctgcgctatggtgttccaatggctactccg
gtatttgatggtgctaaggaaagcgaaattaaggccatgttgaaactggcagacctgcca
gatagtggtcagatgcagttatttgacggtcgtactggtaatcagtttgagcgccccgtt
actgttggctatatgtatatgctaaaactaaaccacctagtagacgataagatgcatgct
cgttctactggctcatatagcctagttactcagcagccgcttggtggtaaggctcagttc
ggtggtcagcgtttcggagagatggaggtttgggcattagaagcatacggtgcttcttat
actctgcaagaaatgctaacagtgaagtcagacgatgtgaacggtcggaccaagatgtac
aaaaacattgtggacggcgatcaccgtatggagccaggaatgccagagtccttcaacgtg
ttgatcaaagaaattcgttctcttggtattgatatagatctggaaaccgaataa
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integrated database retrieval system
