Paenibacillus sp. FSL R5-0345: R50345_27955
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Entry
R50345_27955 CDS
T03333
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
paef
Paenibacillus sp. FSL R5-0345
Pathway
paef03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paef00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R50345_27955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paef03021
]
R50345_27955
03400 DNA repair and recombination proteins [BR:
paef03400
]
R50345_27955
Enzymes [BR:
paef01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R50345_27955
Transcription machinery [BR:
paef03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R50345_27955
DNA repair and recombination proteins [BR:
paef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R50345_27955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AIQ38099
LinkDB
All DBs
Position
complement(6130232..6133777)
Genome browser
AA seq
1181 aa
AA seq
DB search
MAGHLVQYGRRTRRSYARINEVLEVPNLIEIQQKSYDWFLEEGLREMFQDISPIQDFTGN
LVLEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTE
TGTFIINGAERVIVSQLVRSPSVYFSTKVDKNGKKTYTATVIPNRGAWLELETDAKDIMY
VRIDRTRKIPVTVLLRALGFGSDAEILELLGNDEYIRNTLDKDNTDSTEKALIEIYERLR
PGEPPTLDNAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAQPLVDEATGE
ILAESGQMVDRRLLDELIPYFEKNVAFKNYRVTGGVMDSEDIPLQTIDVFSPIEEGRVIK
LIANGNIDKSVKHITQADIISSISYFINLLHGIGNTDDIDHLGNRRLRSVGELLQNQFRI
GLSRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH
KRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYGF
IEAPYRWVDPKTGKVTEQIDYLTADEEDNYVVAQANVLIDEDGSFKEDMVIVRYNKDSDN
ITTMPSNRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVG
TGMEHKSAKDSGVCVVSKYDGIIERSSANEIWLRRVETVEGKEVKGDIVKYKLHKFMRSN
QGTCINQRPLAKRGDIVKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLSE
KLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRIGAEISAG
DILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKVFTRENGD
ELPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVQVVLNP
LGVPSRMNIGQVLEVHIGMAALRLGIHIATPVFDGAREYDVFDTMEEAGMQRNGKTVLYD
GRTGERFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIKELQSLG
MDVKILSGDEQEIEMRELDDEDETSGDKLSLNLEGAEVGVE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatcttgttcagtatggtcgacgcactcggcggagctatgcgagaattaac
gaggtactcgaggtcccgaacctgatcgagatccaacaaaaatcgtatgattggtttttg
gaggaaggattgcgggaaatgtttcaggacatctcgccgatccaggatttcacaggtaat
ttggtactagagttcattgattacagcctgggtgaaccaaaatatacggttgacgacgct
aaagagcgggacgtgacgtatgcggctcctctgcgtgtaaaggtgcggctcattaataag
gagaccggtgaggtcaaagagcaggaagtgttcatgggagatttcccgctgatgacggag
accggcacttttattattaacggtgcggaacgggttattgtcagccagttggttcgctct
ccaagcgtctatttcagcacaaaagtggataagaacggcaaaaaaacctacaccgccaca
gtaatcccgaaccgcggagcctggttggaacttgagaccgacgctaaggatattatgtat
gttcgtatcgatcggactcgtaaaattcctgttaccgtacttttgcgtgctctcggtttc
ggtagtgatgccgaaattctggaattgcttggcaatgatgaatatattcgcaatacgctg
gataaagacaacacggactccacggagaaggcgcttattgaaatttacgagcgtttgcgt
ccgggcgaaccgccgacactagacaatgccaaaagtttgctggtcgcgcgtttctttgat
ccaaaacgctacgacctagccaatgtaggccgttacaaaatcaataaaaagctacacatt
aagaaccgtcttttcaatcaacgtcttgctcagcctttggttgacgaagctacaggagaa
atcctggcagagtccggccaaatggtcgatcgcagactgcttgatgaattgatcccatat
ttcgaaaagaatgttgcctttaaaaactaccgtgttactggtggggttatggacagcgaa
gatattcctcttcagacgattgacgtattctcgccaattgaagaaggtcgggttattaag
ctgatcgctaacggcaacatcgacaagtctgttaagcacattactcaagctgatattata
tcctcgatcagctactttattaatttgcttcacggaattggtaataccgatgatattgac
catttgggtaaccgtcgtctgcgttctgtgggtgaacttcttcagaatcagttccgtatc
ggtttgtcccgtatggagcgcgttgtgcgtgaaagaatgtcgattcaggatgctaatgca
attactcctcaagctctgatcaatattcgtccggttatcgcgtccattaaagagttcttc
ggtagctctcagttgtctcaatttatggatcagacgaacccgcttgcggaacttacgcat
aaacgtcgtctatctgcactcggacccggtggtttgacacgtgagcgcgcgggctttgaa
gttcgtgacgtccatcacagtcactacggtcggatgtgtccaattgaaacaccggaaggt
ccgaacattggattgatcaactccttgtctacctttgctcgtatcaacgaatacggcttt
attgaagctccatatcgttgggtagatccaaagacaggtaaggtaactgaacaaatcgat
tatctgactgctgatgaggaagataattatgtagttgctcaggctaatgtattgatcgac
gaagatggctcctttaaggaagacatggtaatcgttcgttacaataaagactctgacaac
attacaacgatgccaagtaatcgtgtagattacatggacgtttcgcctaaacaggtcgta
tccgtcgctacggcgctcattccgttccttgagaacgatgactccaaccgcgcactgatg
ggatctaacatgcagcgtcaagccgttccacttctaattcctaaagctccgctggtcgga
acagggatggagcataaatccgctaaggattctggcgtatgtgttgtttctaagtatgac
ggtattatcgaacgttcttcagctaatgaaatttggctgcgccgggttgaaacagtcgaa
ggcaaagaagttaaaggcgatatcgttaaatataaattacacaaatttatgcgttctaac
caaggtacctgtattaaccaacgtcctcttgctaaaagaggggacattgttaagaaaggt
gatatcctggcagatggtccttccacagaaatgggcgaacttgctcttggccgcaacgtt
gtcgttgcgttcatgacttgggaaggttacaactacgaggatgcgatcctgttaagtgag
aaactagttaaggaagatgtatacacttcgatccatatcgaagaatacgaatctgaagct
cgtgacactaaactgggacctgaagaaattactcgtgatattccaaacgtgggtgaagaa
gctctgcgcaatcttgatgagcgtggaatcatccgtatcggtgcggaaatcagcgctggt
gacattctggttggtaaggttactccgaagggtgtaactgaactgacagcagaagaacgt
ctcctgcacgctatctttggtgagaaggctcgtgaagtacgggatacctctttacgcgtt
cctcacggtagtgatggtattatcgtggacgttaaagtatttacacgtgagaacggtgat
gaactgcctcctggtgtaaatcaattggttcgtgtctatatcgctcagaaacgtaagatc
tctgagggtgacaaaatggccggacgtcacggtaacaagggtgtcgttgcccgtatcctg
ccagaagaagatatgccgttccttccggacggtacgccagtacaggttgtacttaaccct
ctaggcgttccttctcgtatgaacatcggacaggtgctcgaggtccatattggtatggcc
gcattgcgtctgggtattcacattgcaacgccggtatttgacggagcgcgtgagtacgac
gtgtttgatacgatggaagaagcaggtatgcagcgtaatggtaagactgtattgtacgat
ggtcggacaggtgaacgcttcgaacgtgaagttactgtcggcgtcatgcatatgattaaa
ctggcgcacatggttgatgataagattcacgcccgttcaacaggtccttactcattagtt
acgcaacagccgctgggtggtaaagctcagtttggtggacagcgtttcggggagatggaa
gtgtgggcgcttgaagcttatggtgctgcatatacattgcaagaaatcttgaccgtgaaa
tccgatgacgtggttggtcgcgtgaaaacgtacgaatccatcgtcaaaggtgaaaatgta
ccggaaccaggtgttcctgaatcgttcaaagtattgatcaaagaactgcagtccctgggt
atggatgttaagattcttagcggtgacgagcaggaaattgaaatgagagaattggacgat
gaggacgagacgtcaggcgacaagctaagcctcaatttagaaggcgcagaagtcggagta
gaataa
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integrated database retrieval system
