Paenibacillus sp. FSL R5-0345: R50345_28275
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Entry
R50345_28275 CDS
T03333
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
paef
Paenibacillus sp. FSL R5-0345
Pathway
paef03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R50345_28275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paef03400
]
R50345_28275
DNA repair and recombination proteins [BR:
paef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R50345_28275
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
R50345_28275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
nSTAND1
AAA_16
AAA_29
RsgA_GTPase
AAA_21
AAA_22
nSTAND3
BCA_ABC_TP_C
AAA_25
DnaJ_CXXCXGXG
ATPase_2
cobW
Viral_helicase1
MMR_HSR1
PRK
Motif
Other DBs
NCBI-ProteinID:
AIQ38154
LinkDB
All DBs
Position
complement(6207920..6210793)
Genome browser
AA seq
957 aa
AA seq
DB search
MANDNIVIKGARAHNLKNIDVTIPRDRFVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGHP
HCPEHGIEITSQTVEQMVDRIMQYPEKTRLQILAPIISGRKGEHKGLFTDISKQGFVRVR
VDGQLRDLSEDIELEKNKKHTIEVVVDRIVVKDDMETRLTDSLETALKLSGGKILVDIIG
QEELLFSSNFACPVCGFSIEELAPRMFSFNSPFGACTECDGLGMKMVVDPDLLIPDAEKS
IEEGAFLAWTGSTSNYYPQFLKSVCEHFNIPQNVPVSSLSPDHMNKLLHGTGSEKVRFKY
ENDFGQKKDAMVAFEGIIPNLERRYRETASDGIREFIEGFMSAKPCHVCKGKRLKKEILA
VTINEQNISDITDLSIGDCQHWFEEIKLSEKETAIANLILKEICNRLGFLVNVGLDYLTL
SRAAGSLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLAHMRDLGNT
LIVVEHDEDTMMAADYIIDIGPGAGIHGGQVMAQGTPEEIMNDPNSLTGEYLSGRKFIPV
TAKRRATDDRWIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLINEILYKSLARQ
LNKAVKVRPGEHKEIRGLENLDKVIEIDQSPIGRTPRSNPATYTGVFDDIRDLFSKTNEA
KVRGFQKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYK
GKNISDVLEMTVEDATEFFVNIPRIHRKMQTLMDVGLGYIKIGQPGTTLSGGEAQRVKLA
SELYRRSTGKTLYILDEPTTGLHVDDIGRLLEVLHRLVDSGESVLVIEHNLDVIKTADYL
IDMGPEGGSGGGTVLATGTPEKLITVAESYTGKYLKPVLIRDTERTKALMLETAETT
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
ttggcgaacgataatattgtaattaaaggcgcgagggcgcacaatctcaaaaacatcgat
gtgacgattccacgtgaccgtttcgtcgtgctgacgggactgagcggatcaggtaagtcg
tcgcttgcatttgataccatttatgcagaaggacaacggcgttatgttgaatctttgtcc
gcttatgctcgtcagttcctgggtcaaatggagaaaccggatgtggattccatagacgga
ttgtccccggcgatctctattgatcagaagacaacaagtcgtaatccgcgatctacagta
ggtacggtaactgagatttatgactatctgcggttgcttttcgcgcgaatcggtcaccct
cattgtccagagcatggaattgagattacttcgcagaccgttgaacaaatggtagaccgg
attatgcagtatccagagaagacacgattgcagatcctggcgcctatcatttcaggacgt
aaaggggaacataaggggctcttcacagatatctccaagcaaggcttcgtacgtgtacgt
gtggatggacaactgcgagatctgtctgaagatatcgagttggagaagaataaaaaacac
actatcgaagttgttgttgaccggattgtcgttaaagatgatatggagacacgccttaca
gattcattggagacggccctgaagctttcgggtggtaaaatccttgtggatattatcggg
caggaagagcttctctttagctctaactttgcttgtccggtgtgtggattcagtattgaa
gaattagcaccgcgtatgttctctttcaacagtccattcggagcctgcacggagtgcgat
ggtcttggtatgaaaatggtggtcgatccagacctgcttattcctgatgctgagaaatct
attgaagagggtgcttttttagcttggaccggaagtacctccaattactatccgcaattt
ctaaagtctgtgtgtgagcactttaatattccacagaacgttccagtgagcagtttatca
cctgatcatatgaataaactactgcatggtacaggtagtgagaaggtacgcttcaaatat
gagaatgattttggacaaaagaaagatgcgatggttgcttttgaagggattattccgaat
ctggagcgtcgttaccgggagaccgcatctgacggtattcgtgaatttatcgaaggattt
atgagtgctaagccttgtcatgtctgtaagggtaaacgtttgaagaaagaaattttagcg
gttacgatcaacgaacaaaatatttcggatattaccgatctctcaattggtgactgtcag
cattggtttgaagaaataaagttaagtgagaaagagacagctatcgccaatctcattctt
aaagaaatctgtaatcgtcttgggttcttggtaaatgtcggattagactatttgacactt
agccgcgcagcaggctcactatctggtggtgaagcacagcgtatccggttggcgactcag
atcggttcaagcttaatgggtgtattgtacattctggatgaaccaagtattggactgcat
cagcgggataatgatcgcctcatctcaacccttgcgcatatgcgtgacttagggaatacg
ctgattgttgtagagcatgacgaagacacgatgatggcagcggattatattattgatatc
ggtcccggtgcaggtattcatggtggacaagttatggcacaagggacgccggaagaaatt
atgaatgatccgaattccttaacgggtgagtatttaagcggtcgtaagtttattccggta
accgctaagcgtcgcgcaactgatgatcgctggattgaaatccgtggtgctaaagagaat
aacctgaagaatgtgaatgtgaagattccattaggtgtttttactgcggtaacaggggta
tcgggttcgggtaaatcctcactgattaacgagattctttataagagcttggcgcgtcaa
ttgaataaagctgtgaaggttcgacctggtgagcacaaagaaattcggggactggaaaat
ctcgataaagttattgaaatcgaccaatcaccaattgggcgtacaccacgctctaaccca
gcaacctatacgggtgtatttgacgacattcgtgatctgttctcgaagacaaatgaagct
aaagtgcgcgggttccaaaaaggacggtttagctttaacgtaaaaggcggacgctgtgaa
gcctgccgtggggacggaattatcaagattgagatgcacttcttgccggacgtctatgtt
ccttgcgaagtatgtaagggcaagcgctataaccgggaaacactagaggtgaagtataaa
gggaagaatatttctgatgtgctggagatgacggtagaggatgctacagaattcttcgtg
aatattcctcgtattcatcgtaaaatgcaaacactgatggatgttggtcttggttacatt
aagattggtcagccaggtactactttatccggtggtgaagcgcagcgcgtgaagttggct
tccgagctataccgtcgtagtaccggaaaaacactctatattttggatgagcctacaaca
ggcctgcatgtggatgacattggtcgtttactagaagtattacatcgcttggtggattcc
ggagaatcagtacttgtcattgagcataatctggatgttattaagaccgcggactatctc
atcgatatgggacctgaaggcggcagtggcggcggaactgtgctggcaacaggaacacca
gagaagcttattaccgttgcggagtcttacacaggtaagtatctgaagccggttctgatt
cgtgatacagagcgtaccaaagctcttatgcttgagacggcggaaaccacttaa
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