Paenibacillus sp. FSL P4-0081: P40081_06065
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Entry
P40081_06065 CDS
T03332
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
paen
Paenibacillus sp. FSL P4-0081
Pathway
paen03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
P40081_06065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paen03400
]
P40081_06065
Enzymes [BR:
paen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
P40081_06065
DNA repair and recombination proteins [BR:
paen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
P40081_06065
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AIQ27805
UniProt:
A0A7U4HDZ3
LinkDB
All DBs
Position
complement(1371435..1372319)
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AA seq
294 aa
AA seq
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MPKTIRGSITAGGHEISITNPDKLLWPERGITKQIYLLKLAALSPYLLRYCQGRLLTVIR
YPHGVPGMSFYQKNAPEPLPEFVHTATHENITYIVLQGLPELLWLGNLAALEFHPSLHYA
GSELPCEWMIDLDPSLEVEPRIMEAAATVGEVLRSLGLASVPKTSGATGVQIIVPVEPGV
TFDGLRRVGHFVGRYVTEKRPDLFTLERLKKNRGDKIYFDYLQHYGGKTLAAPYTPRARP
LATVSTPLLWEEVQRNVKPTDYHLLNIEERLARMGDLIAQVPPQPVGDIIAKLP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagacgatcagaggctccattaccgcagggggacatgagattagcattacgaac
ccggataagctgctatggcctgaacgcggcatcaccaagcagatctatctgcttaagctg
gccgcgctctctccttatctgctgcgctactgccagggacggctgctcacggtaatccgc
taccctcatggtgttccggggatgtccttttaccagaagaatgcccccgagccgctgccg
gaattcgtgcatacagcaactcatgagaatattacctatattgtgctgcagggcctcccg
gagctgctctggctgggcaatctggccgcgctcgaattccatccctcgctgcattatgcg
ggcagtgagctcccctgcgaatggatgattgatctggacccctcgcttgaggtcgagccg
cgtattatggaggcagccgctacggtgggcgaggtactgaggtcactgggactggcctct
gtgcccaagacctccggtgccaccggtgtgcagatcattgttccggtggagccgggagtc
accttcgacggcctgcgccgggtaggccatttcgtcggccgctatgttacggagaagcgt
cccgatctgttcactttggagcgcctgaagaaaaaccgcggggacaaaatctatttcgat
tacctccagcattacggcgggaaaactcttgctgccccatacaccccgcgggcccgtccg
ctggcaaccgtctcaacgcccctcctgtgggaggaagtgcagcgtaacgtcaagcctacc
gattaccatctgctgaacattgaggagcgtctggcccggatgggcgatcttatcgcccag
gtccctccacagccggtgggtgatattattgccaagctgccctga
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