Pasteurella aerogenes: NCTC13378_01703
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Entry
NCTC13378_01703 CDS
T05989
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
paet
Pasteurella aerogenes
Pathway
paet03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC13378_01703 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paet03021
]
NCTC13378_01703 (rpoB)
03400 DNA repair and recombination proteins [BR:
paet03400
]
NCTC13378_01703 (rpoB)
Enzymes [BR:
paet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC13378_01703 (rpoB)
Transcription machinery [BR:
paet03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC13378_01703 (rpoB)
DNA repair and recombination proteins [BR:
paet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC13378_01703 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
SPG4
DUF1350
Motif
Other DBs
NCBI-ProteinID:
VEG72189
LinkDB
All DBs
Position
1:complement(1799167..1803195)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLNVPYLLTIQLDSFEKFIQRDPDGQQGLEAAFRSVFPIV
SNNGNTELQYVSYQLGEPVFDVRECQIRGTTFAAPLRVKLRLVSYDKDAALGTIKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLYARIDRRRKLPATIILRALDFTTEQILDIFFDKVVFEIKDNKLLMT
LVPERLRGETATFDIEANGKVYVERGRRITARHIRALEKDQISQVEVPTEYIVGKVSAKD
YVDLETGEIICAANMEISLELLAKLAQAGYKTIETLFTNDLDHGPYISETLRVDPSNDRL
SALVEIYRMMRPGEPPTKEAAEGLFDNLFFSQERYDLSAVGRMKFNRSIGIEEETGSGIL
SKDDIISVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLS
LGDLDAVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRKVVNGQVT
EEIEYLSAIEEGKYVIAQANSNLDEELRFTDAFVTCRGEYGESGLYRPEEIHYMDVSTQQ
VVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPVALDSGVAVVAK
RGGTIQYVDASRIVVKVNEDETVAGEAGIDIYNLIKYTRSNQNTCINQIPCVNLGEPIER
GEILADGPSTDLGELALGQNMRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCV
ARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD
LVEELEILEAGLFARVRKLLVSGGVDEKQLDKLDRTKWLDQTLADEDKQNQLEQLAEQYE
ELRKEFEHKLEVKRGKIIQGDDLAPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISKI
NPIEDMPYDENGQPVDIVLNPLGVPSRMNIGQILETHLGLAAKGIGDQINAMIKQKQSVE
KLRGYIQKAYDLGEGSQKVDLSTFTDEEVMRLAQNLRKGMPLATPVFDGAHEKEIKELLQ
LGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVSGTHQMDPSTP
ESFNVIMKEIRSLGINIDLDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcatataccgagaaaaaacgtattcgtaaagacttcggaaaacgtccgcaa
gttttaaatgtaccttatttattaacaattcaattagattcttttgaaaaatttattcaa
agagatccagatgggcagcaaggtttagaagccgcatttcgctctgtattcccgattgtc
agcaataatggcaacacggaattgcagtatgtaagttatcaattaggcgagccggttttt
gatgtgcgtgaatgtcaaattcgtggtacgacttttgccgcaccattacgtgtaaaattg
cgcttagttagctatgataaagatgcagcactgggtaccatcaaagatattaaagaacaa
gaagtttatatgggtgaaatcccattaatgactgataacggtacctttgtgattaatggt
actgagcgtgttatcgtgtcgcaattacaccgcagtcccggtgtgttctttgatagtgat
aaaggcaaaactcattcttccggtaaagtgctttataatgcacgtattattccttaccgt
ggttcttggttggattttgagtttgatccgaaagataatctatatgcacgtatcgaccgt
cgtcgtaaattgccggccaccattattttgcgcgcgttagattttacaactgaacaaatt
ttagatattttcttcgataaagttgtttttgaaatcaaagataacaagttattgatgacc
ttagtaccggaaagattgcgtggtgaaaccgcaacgttcgatattgaagctaatggtaaa
gtctatgtggaacgtggtcgtcgtattactgcgcgtcatattcgtgcgttagaaaaagat
caaatttctcaagttgaagtgccgactgaatatattgtcggtaaagtgtctgctaaagac
tatgtggatttagaaaccggcgaaattatttgtgcagcaaatatggagatttccttagag
ctattagcaaaattagcacaagccggttataaaaccattgaaacattatttactaatgat
ttagaccatggtccttatatttccgaaactttgcgcgtggatccgtcaaacgatcgttta
agtgccttggtggaaatttatcgcatgatgcgaccgggcgagccgccaacaaaagaggca
gcagaaggtttgtttgataacttattcttctctcaagagcgctatgatttatcggcggtt
ggtcgtatgaaattcaaccgttctattggtattgaagaagaaaccggcagcggtattcta
agcaaagacgatatcatcagtgtgatgaaaaaactgattgaaattcgtaacggtcgtggc
gaagtggatgatattgaccacttaggtaaccgtcgtatccgttctgtgggtgaaatggca
gaaaaccaattccgtatcggtttggtgcgagtagaacgtgcggttaaagagcgtttgtct
ttgggggatttagatgcggtaactccacaagatttaattaatgcgaaaccgatttctgca
gcagtgaaagaattctttggttcatctcaattatcacaatttatggaccaaaataacccg
ttatcagaagtaacacacaaacgtcgtatttccgcattgggaccgggcggtttaacccgt
gaacgtgccggctttgaagtacgtgacgttcatgcgactcactatggtcgcgtatgtccg
attgaaacgcctgaaggtccaaatatcggtttgattaactcactttccgtgtatgcgcgt
acgaatgattatggtttcttagaaacaccatatcgtaaagttgttaacggtcaagtgacg
gaagaaattgagtatttgtctgcgattgaagaaggtaaatatgtcattgcacaggcaaac
tcaaatttagacgaagaattgcgttttactgatgcgttcgtcacttgtcgtggtgaatat
ggtgaatccggcttatatcgtccagaagaaattcactatatggacgtttctacacagcaa
gtagtttctgtggcagcggcacttattccgttccttgagcatgacgatgcgaaccgtgct
ttgatgggagcgaacatgcaacgtcaagcagttccaacattacgtgcagataaaccgttg
gtgggtaccggaatggaaaaaccggtggcattggactccggtgttgcggtcgtagcaaaa
cgtggcggtactattcaatatgtggatgcttcccgtattgtggtgaaagtaaatgaagat
gaaactgtcgcaggcgaagcgggtattgatatttataacttaattaaatacacccgttct
aaccaaaatacttgtattaaccaaattccttgtgtgaacttgggtgagccaattgaacgt
ggcgaaattcttgccgatggtccatcaaccgatttaggtgaattggcattaggtcaaaat
atgcgtgtggcatttatgccatggaacggttataacttcgaagactcgatgttagtgtct
gaacgtgttgtacaagaagatcgtttcaccacaattcatattcaagaattatcttgtgtg
gcacgtgataccaaattaggttcggaagaaatcactgcagatattccgaacgtaggtgaa
gcggcgttaagcaaacttgatgaatccggtattgtttatatcggagcggaagtaaaaggt
ggcgatattctggtgggtaaagtgacaccaaaaggtgaaacgcaattaacaccagaagaa
aaattattacgtgcgatctttggtgaaaaagcctctgatgtaaaagattcttctttacgc
gtaccaaacagcgtatccggtactgttattgacgttcaagtctttacgcgtgatggcgta
gaaaaagataaacgtgctttagaaatcgaagaaatgcaactgaaacaagcgaaaaaagac
cttgtggaagaattggagattttagaagccggtttatttgcccgtgtacgtaaattgctt
gtttccggtggtgtggatgaaaaacaattggataaattggaccgcacgaaatggttagac
caaaccttagctgatgaagacaaacaaaatcagttagagcaattagcggaacaatacgaa
gaattgcgtaaagagtttgaacataaacttgaagtgaaacgcggcaaaattatccaaggt
gatgatttggcaccgggcgttttaaaaatcgtgaaagtttatcttgcagtgaaacgccac
atccaaccgggtgataaaatggcgggtcgtcacggtaacaaaggggttatctcaaaaatt
aacccgatcgaagatatgccttacgatgaaaacggtcaaccggtggatatcgtgttaaac
ccacttggggttccatcacgtatgaatatcggtcagatccttgaaacacacttaggtttg
gctgcgaaagggattggtgatcaaatcaatgccatgatcaaacaaaaacaaagtgtagaa
aaattgcgtggttatatccaaaaagcctatgatttgggtgaaggatcgcaaaaagtggat
ttaagtacctttactgatgaagaagtgatgcgtttagcacaaaacttacgtaaaggtatg
ccgcttgcgacaccggtgtttgatggtgcgcatgaaaaagaaattaaagagcttttacaa
ttgggcggtttgccgacttccggtcaaattaccttatatgatggtcgtaccggtgagaaa
tttgaacgtccggttaccgttggttatatgtatatgctcaaattgaaccacttagttgac
gacaaaatgcacgctcgttcaaccggttcttacagtcttgttacacaacaaccattgggt
ggtaaagcacaattcggtggtcaacgtttcggtgagatggaggtgtgggcgcttgaagct
tacggtgctgcatacacattacaagaaatgttaaccgtgaaatccgatgacgtgaacggt
cgtacgaagatgtataaaaacatcgtgagcggcacgcaccaaatggatccaagtacgcca
gaatctttcaatgtaatcatgaaagagatccgttcacttggtatcaatatcgacttagat
gaagaataa
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