Paraneptunicella aestuarii: KIH87_16600
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Entry
KIH87_16600 CDS
T07748
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
paew
Paraneptunicella aestuarii
Pathway
paew03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paew00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KIH87_16600 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paew03021
]
KIH87_16600 (rpoB)
03400 DNA repair and recombination proteins [BR:
paew03400
]
KIH87_16600 (rpoB)
Enzymes [BR:
paew01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KIH87_16600 (rpoB)
Transcription machinery [BR:
paew03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KIH87_16600 (rpoB)
DNA repair and recombination proteins [BR:
paew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KIH87_16600 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
UAA38286
LinkDB
All DBs
Position
complement(4255863..4259891)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFRKFIEVDPEGQYGLEAAFRSVFPIK
SYSGSSELQYVNYRLGEPVFDVKECQIRGLTYSAPLRVKLRMVLYDREAAPGTVKDIKEQ
EVYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIVLRAMDMSTEEILSLFFEKETVRISEKSFLMS
IVPDRLRGETAKFDIKDAEGNVLVEAGRRVSARHTRQMEKAGIAELEVPAEFLLGRVYAV
NYIDEKTGEIIVNANDEVTLENIHAITQAGFDSFETLYINDLDHGSYISDTVRIDPSSNR
LEALVEIYRMMRPGEPPTKDAAEALFDNLFFSEERYDLSSVGRMKFNRRLGREELIGEGT
LSKMDIIDVMRQLIAIRDGKDDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL
SLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGPGGLT
RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSCYARTNDYGFLETPYRKIVDGIV
TDDVEYLSAIEEGLYPIAQASAVLTEDSRLADDLVPCRHKGEFTLMSKEDIKFMDVAPQQ
IVSVAASIIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMEKTVAIDSGVTVVAK
RGGVVDYVDASRIVIKVNDNEMVAGEAGIDIYNLTKYTRSNQNTCINQKPTVNVGEPIVA
GDVLADGPSTDLGELALGQNMRIAFMPWNGFNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGPEEISSDIPNVGESALSKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDTSLRVPNSVHGTVIDVQVFTRDGVEKDKRALEIEDMQLRQVKKD
LGDEFGILADGIFARTRNLLINNGVSEDKLNTLPREKWFDIPLQNEDAQSELEQSADQYA
ETKEDFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISSI
QPVEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAANGLGVKIDRMIKEQQELA
KLREFLQEVYNSGTGRQEVDLSTFTDDEVRRLAENLRRGVPTATPVFDGATEAEIKELLK
LADLPESGQIRLYDGRTGQQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEQ
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttatagcgaaaagaaacgtatccgcaaggactttggcaaacgcccacag
gtattggaaatcccataccttctttctattcaacttgactcatttcgtaagttcatagaa
gttgatccagaaggccaatacggcctggaagcggcgttccgttcggtattcccaattaaa
agctactctggcagttcagagttgcaatatgtgaattatcgcctaggcgagccagtattt
gatgtgaaagaatgtcaaattcgaggcttgacttattctgcccctctacgggttaaattg
cgtatggttctctatgatagagaagcagcgccaggcactgtaaaagatatcaaagaacaa
gaagtgtatatgggtgaaattccgttaatgacggacaccggcacttttgttatcaatggt
actgaacgtgttatcgtttctcagttgcaccgttcacccggtgtattcttcgatcacgac
cgtggtaagactcactcttctggtaaggtgttatataacgctcgtgttattccttaccgt
ggctcctggttagacttcgaattcgatcctaaagataatctctttgttcgtatcgatcgt
cgccgtaagctgcctgcaacaattgtcttgcgtgcaatggatatgagcacagaagaaatt
ctgagcttgttcttcgaaaaagaaacggttcgtatctcagagaagtcattcctgatgagt
atcgtaccggatcgtttgcgtggtgaaactgcgaagttcgatattaaagatgccgaaggt
aatgtgcttgtagaagctggccgtcgtgtatctgctcgccacactcgtcaaatggaaaaa
gcaggcattgctgaactggaagttccagcagaattcctgttagggcgtgtttacgctgtt
aattacattgatgagaaaaccggtgaaatcatcgtaaatgctaacgatgaagtaaccctg
gaaaatattcatgcaattacccaggctggtttcgacagttttgaaactctgtacatcaac
gatttggatcatggttcatacatttctgatactgttcgtatagaccctagtagcaacaga
ttggaagcattggtagagatctaccgcatgatgcgtcctggtgaaccgccaacgaaagat
gctgctgaagcattgttcgacaacttgtttttctctgaagaacgttatgacctttcctca
gtcggtcgtatgaagttcaaccgccgcttaggccgagaagaactgattggtgaaggtaca
ttgagtaaaatggacattatcgacgttatgagacagctgattgctatccgtgacggtaaa
gatgatgttgatgatattgaccacttgggtaaccgtcgtatccgtagtgttggtgagatg
gctgagaaccagttccgtgtcggtttggttcgtgttgaaagagcagtaaaagaacgcttg
agcttgggcgatttagacaatgtaatgcctcaagacctgatcaacgccaagccaatttct
gctgcggttaaagagttctttggttcaagccaattgtctcagttcatggatcaaaacaac
ccattgtcagaagttacacataaacgtcgtgtttctgcattaggtcctggtggtttgact
cgtgagcgtgccggctttgaggttcgtgacgtacatccaactcactatggtcgtgtatgt
cctatcgagactcctgaaggtccaaacatcggtttgatcaactcattgtcttgttatgcc
cgtaccaacgattacggtttcctggaaacgccataccgtaagattgttgatggtatcgta
acggatgacgttgagtatttgtcagccatcgaagaaggtttatacccaatcgctcaggca
agcgcggtattaactgaagacagtcgtttggctgatgacctggttccatgtcgtcataaa
ggtgaattcaccttgatgtctaaagaagacattaaattcatggacgttgcgccgcaacag
atcgtttcagttgctgccagtattatcccgttccttgaacacgatgacgcaaaccgtgcc
ttgatgggatcgaacatgcaacgtcaagccgtacctacactaagagctgagaagcctctg
gttggtactggtatggagaaaacggttgctatcgactcaggcgtaaccgttgttgccaag
cgtggtggtgttgttgattacgttgacgccagccgtattgttatcaaagtaaatgataac
gaaatggttgcgggtgaagccggtatcgacatctacaacctgactaaatatacgcgttct
aaccaaaacacttgtatcaaccaaaagcctacagtaaacgttggtgaacccattgttgct
ggtgatgtattggctgatggcccttcaaccgatttgggtgaattggcgcttggtcagaac
atgcgcatcgcatttatgccttggaacggcttcaacttcgaggactcgatcctgatttct
gagcgtgtagctcaagaagaccgtttcacaaccatccacattcaggaattgagctgtatt
gctcgtgacactaaattagggcctgaagaaatcagctctgatattcctaacgtgggtgag
tctgcactaagcaaactggatgaatctggtgttgtttatatcggtgcagaagttaaaggt
ggtgacattctggtaggtaaagtaacacctaaaggtgaaactcaactgacgccagaagag
aaactattacgtgctattttcggtgagaaagcgtctgacgttaaagatacctctttgcgt
gtacctaacagtgttcacggtacagttatcgacgtacaggtcttcactcgtgatggcgta
gaaaaagacaagcgtgctttggaaatcgaagacatgcaacttcgtcaggtcaagaaagac
ctgggggacgaatttggtattttggcagacggcatctttgcccgtacacgtaacttgtta
attaacaacggcgtgtcggaagataagttgaatactctgccaagagaaaaatggttcgat
attccactacaaaacgaagatgcacagtctgagttggaacaaagcgctgaccaatacgca
gaaaccaaagaagacttcgataagaagtttgaagcgaaacgtcgcaagatcactcaaggt
gacgaccttgctccaggtgtattgaagatcgttaaggtctacctggctgttaagcgtcaa
attcaaccgggtgacaaaatggcgggtcgtcacggtaacaagggtgttatctcgtctatc
cagccagttgaagatatgccttacgatgaaaacggcacgccggttgatatcgtattgaac
cctctgggtgtaccttcacgtatgaacatcggtcagatccttgaaactcacttggggatg
gctgcaaacggcttgggtgtgaagattgatcgcatgatcaaagaacagcaagaattggcg
aaattacgcgagttcctgcaagaagtatataactccggtactggtcgtcaggaagttgat
ttatcaacctttactgatgacgaagtaagacgcttggctgaaaacctgcgtcgtggtgta
ccgactgctacgccagtattcgatggtgctactgaagctgaaatcaaagagttgttgaag
ttggctgatttgcctgaaagtggccagatcagactatacgacggtcgtacaggccaacaa
ttcgagcgtccggttactgtaggttacatgtatatgctgaagttgaaccacttggttgac
gacaaaatgcatgctcgttctacaggttcgtacagcttggttactcaacagccgttgggt
ggtaaagcacagttcggtggacagcgtttcggggagatggaagtgtgggcacttgaagct
tacggtgctgcttatactcttcaagaaatgttgactgttaagtccgatgacgtgaatggt
cgtaccaagatgtataagaacatcgtggacggggatcaccgtatggaacccggaatgccg
gaatctttcaacgtattgttgaaagagattcgttctctgggtatcaacatcgagttggaa
gaacaatag
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