Paracoccus aerodenitrificans: PAE61_12235
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Entry
PAE61_12235 CDS
T09265
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
paez
Paracoccus aerodenitrificans
Pathway
paez03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paez00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PAE61_12235 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paez03021
]
PAE61_12235 (rpoB)
03400 DNA repair and recombination proteins [BR:
paez03400
]
PAE61_12235 (rpoB)
Enzymes [BR:
paez01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PAE61_12235 (rpoB)
Transcription machinery [BR:
paez03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PAE61_12235 (rpoB)
DNA repair and recombination proteins [BR:
paez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PAE61_12235 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WBU63125
LinkDB
All DBs
Position
complement(2209649..2213803)
Genome browser
AA seq
1384 aa
AA seq
DB search
MAQSYVGQKRIRRSYGNIREVLEMPNLIEVQKSSYDLFLNSGDAPTHTDGEGLQGVFQSV
FPIRDFNETATLEFVKYELEKPKYDVDECQQRDMTYAAPLKVTLRLIVFDVDENTGAKSV
KDIKEQDVFMGDMPLMTQNGTFIVNGTERVVVSQMHRSPGVFFDHDRGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDLVFARIDRRRKLPVTTLLYALGMDQEGIMDAFYETVNFRLEK
AKGAESGWVTRFFPERVRGSRPAYDLINAATGEVITAAGEKVTPRKVKQLLDGGDEIDLL
VPFDQIIGRFVAKDIINEETGFIYAEAGDEITAEYDKEGELSGGLLKVLLDNDINDIPVL
DIDNVNVGAYIRNTMASDKNMNREQALMDIYRVMRPGEPPTVEAASTMFDSLFFDSERYD
LSAVGRVKMNMRLDLDAPDTQRTLRPEDIVACVKGLVELRDGKGEIDDIDHLGNRRVRSV
GELMENQYRVGLLRMERAIRERMSGVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMD
QTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGQNIGLINSLA
TFARVNKYGFIETPYRKVVEGKVTDDVVYMSATEEMRHTVAQANAQLDEDGKFVNELVST
RQAGDFLLNPVDAVDLIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAE
APFVGTGMEATVARDSGAAIMARRSGVIDQVDAQRIVVRATEDLGAGDAGVDIYRLRKFK
RSNQSSTINQRPLVKVGEKVVKGQVIADGPSTDQGELAIGRNVVVAFMPWNGYNYEDSIL
ISERIHRDDVFTSIHIDEYEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEV
GPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGAYGTIVEVRVFNRH
GVDKDERALQIEREEVERLSRDRDDELAILERNIYARLKTLILGKTAVKGPKGIKANSTV
DEDLLGSISRGLWWQLAIGDEDTAKEVEALHDQFNAQKKALEARFDDKVEKVRQGDDLPP
GVMKMVKVFVAVKRKLQAGDKMAGRHGNKGVVSKVVPMEDMPFLADGTPVDLVLNPLGVP
SRMNVGQILETHMGWASRGLGIQIDEALEAFRHGTGDMSGVREAMKNGYGDEMYAETFEG
LDDDRLLEHANAVRSGVPIATPVFDGAKEIDVDDALKRAGFDQSGQSIVFDGRTGEQFAR
PVTVGMKYILKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGA
AYTLQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAE
DDAE
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagtcctatgtcggccagaagcgtatccggcgcagctatggcaatattcgtgaa
gttctcgaaatgccgaacctcatcgaggttcagaaatcttcttatgatctgtttttgaat
tcgggcgatgccccgacccataccgatggtgagggtctgcagggcgtcttccagtcggtt
ttcccgatccgcgatttcaatgagaccgcgacgctggaattcgtgaaatacgagcttgaa
aagccgaaatacgatgttgacgaatgccagcagcgcgacatgacctatgccgcaccgctg
aaagtcacgctgcgcctgattgtgttcgatgtcgatgaaaacaccggtgcgaaatcggtc
aaggacatcaaggagcaggatgtcttcatgggcgacatgcccctgatgacccagaacggt
accttcatcgtgaacggaaccgagcgtgttgtcgtgtcccagatgcaccgctctccgggc
gtgttcttcgaccatgatcgcggcaagacgcacagctcgggcaagctgcttttcgcgtgc
cgaatcattccctatcgcggttcctggctggatttcgaattcgatgccaaggatctggtg
tttgcacggatcgaccgccgccggaaactgccggtgacgaccctgctctatgcgcttggc
atggatcaggaagggatcatggatgccttctatgaaaccgtgaatttccggcttgaaaaa
gccaagggtgcggaatccggctgggtcacgcggttcttccccgagcgtgttcgcggctcc
cgccccgcttatgacctgatcaacgccgcaaccggagaggttattaccgctgcgggcgaa
aaggtgactccgcgtaaggtcaagcagttgctggatggcggtgacgaaatcgacctgctg
gtgccgttcgatcagatcattggccggtttgtcgccaaggatatcatcaatgaggaaacc
ggcttcatctatgctgaggcaggcgatgaaatcaccgcggaatatgacaaggaaggcgag
ctttcgggcggtcttctgaaggttctgctggataatgacatcaacgatatcccggtgctg
gatatcgataacgtcaatgtcggcgcgtatatccgcaatacgatggcgtcggacaagaac
atgaaccgcgaacaggcgctgatggatatctatcgcgtcatgcgtccgggtgagccgccg
accgttgaagcggcctcgaccatgttcgacagcctgttcttcgacagtgagcggtatgat
ctgtccgccgtgggccgggtcaagatgaatatgcgtctggacctcgatgcgccggatacg
cagcgtacgctgcgccccgaggatatcgtggcctgtgtcaagggtctggtcgagttgcgc
gacggcaagggtgagatcgacgatatcgaccatctgggcaaccgccgtgtgcgttcggtc
ggcgaattgatggagaaccagtatcgcgtcggcctgctccgcatggagcgtgccattcgc
gagcgcatgtcaggcgtcgagatcgacaccgtcatgccgcaggatctgatcaacgccaag
ccggcagcggcggcggtgcgcgaattcttcggctccagccagttgtcgcagttcatggac
cagaccaacccgctttccgaggtcacccataaacgccgcctctcggcgcttgggccgggc
ggcctgacccgcgaacgtgcgggcttcgaggtgcgcgacgttcacccgacccattacggt
cggatgtgtcccattgagacgccggaaggtcagaatatcggtctgatcaacagcctcgcg
accttcgcccgcgtgaacaaatacggctttatcgagaccccttaccgcaaggttgtggaa
ggcaaggtcaccgatgatgtcgtgtacatgtccgcgaccgaggagatgcgtcacaccgta
gcgcaggccaatgcgcaactggacgaggacggcaaattcgtgaatgagctggtcagcacc
cgtcaggctggcgacttcctgctgaacccggtcgatgccgtggacctgatcgacgtgtcg
ccgaagcagcttgtatcggttgctgccgcgctgatcccgttccttgaaaatgacgacgca
aaccgcgctctgatgggctcgaacatgcaacgtcaggcggttccgctgctgcgggccgag
gcgccgtttgtcggcaccgggatggaagccaccgtggcccgcgattccggtgcggccatc
atggcccgccgttcgggtgtgatcgatcaggtcgatgcgcagcgtatcgttgtccgcgcg
accgaggatctgggcgcgggcgatgctggcgtggatatttaccgtctgcgcaagttcaaa
cgctcgaaccagtcttcgaccatcaaccagcgtccgctggtgaaggtgggtgagaaggtc
gtgaaagggcaggtcatcgctgacggtccctcgaccgatcagggcgagttggccatcggc
cggaacgtggtcgtcgccttcatgccgtggaacggctataactatgaagactcgatcctg
atttcggaacgaatccaccgcgacgacgtgttcacctcgatccatatcgacgaatacgaa
gtggcggcccgcgataccaagctgggtccggaagaaatcacccgcgacatccccaatgtc
ggtgaagaggcgctgcgcaacctcgatgaggctggcatcgtctatatcggcgctgaggtt
gggccgggcgatattctggtcgggaagatcacgccgaagggtgaaagcccgatgacgcct
gaggaaaagcttctccgcgccatcttcggggagaaggcgtcggatgtacgcgatacctcg
ctgcgtctgcctccgggtgcttacggtaccattgtcgaggtccgtgtcttcaaccgtcac
ggtgtggacaaggacgaacgtgcgcttcagatcgaacgtgaagaagtcgaacgcttgtcc
cgcgaccgcgatgacgagctggcgattcttgaacgcaacatctatgcgcgtctgaaaacc
ctgatcctcggcaagaccgccgtgaaagggccgaaaggcatcaaggcaaacagcaccgtg
gatgaggatctgctgggttcgatttcccgcggcctgtggtggcagcttgccatcggtgac
gaagacaccgccaaggaagtcgaggcgctgcacgaccagttcaacgcgcagaagaaggcg
cttgaggcccgttttgacgacaaggtcgaaaaggtccgtcagggcgacgatctgcctccg
ggcgtgatgaagatggtcaaggtcttcgtcgcggtgaagcgcaagcttcaggctggcgac
aagatggccggtcgtcacggcaacaagggtgtggtgtccaaggtcgtcccgatggaggat
atgccgttccttgcggatggtactccggtcgacctggtgctgaacccgcttggtgtgccg
tcgcggatgaatgtcggtcagattctggaaacccatatgggttgggcgtcgcgcggtctg
ggcatccagatcgatgaggctctggaagcgttccgtcacggcaccggcgatatgtccggc
gtgcgtgaggccatgaagaatggttatggcgacgaaatgtacgcggaaaccttcgagggg
ctggacgatgaccggctgctggagcacgcgaatgctgtgcgcagcggtgttccgatcgca
actccggtattcgacggcgcgaaagagatcgacgtcgatgatgcgctgaagcgtgccggt
ttcgaccagtcgggtcagtccatcgtcttcgacggccgcaccggcgaacaattcgcgcgt
ccggtcacggtggggatgaaatacatcctcaagctgcatcaccttgtcgatgacaagatg
catgcccgctcgaccggtccgtattcgcttgtcacgcaacagcctctgggcggtaaggct
cagttcggcggtcagcgtctgggtgagatggaggtctgggccctggaagcttacggcgct
gcctatacgctgcaggaaatgctgacggtgaagtcggatgacgtggcgggccggaccaag
gtctatgaaagcatcgtcaagggcgaggacaattttgaagccggtgtaccggaatcgttc
aacgtccttgtcaaagaggtccggggtctgggcctcaatatggagcttctggacgcggag
gacgatgccgaatga
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integrated database retrieval system
