KEGG   Pseudoalteromonas agarivorans: PAGA_a0005
Entry
PAGA_a0005        CDS       T06137                                 
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
paga  Pseudoalteromonas agarivorans
Brite
KEGG Orthology (KO) [BR:paga00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:paga03032]
    PAGA_a0005 (gyrB)
   03400 DNA repair and recombination proteins [BR:paga03400]
    PAGA_a0005 (gyrB)
Enzymes [BR:paga01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     PAGA_a0005 (gyrB)
DNA replication proteins [BR:paga03032]
 Prokaryotic type
  DNA Topoisomerases
   PAGA_a0005 (gyrB)
DNA repair and recombination proteins [BR:paga03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      PAGA_a0005 (gyrB)
SSDB
Motif
Pfam: DNA_gyraseB GyrB_insert DNA_gyraseB_C Toprim HATPase_c GyrB_hook HATPase_c_3
Other DBs
NCBI-ProteinID: ATC80628
UniProt: A0A290RIE6
LinkDB
Position
I:3862..6216
AA seq 784 aa
MYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDDIYVTIHLDGSVSVRDNGRGIPTSIHE
EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLTLTIRREGKLHEQT
YSMGVPNAPLTVIGDADTTGTELRFWPSGETFTNLDFHYDILAKRLRELSFLNSGVSIIL
SDEREENKTDHFKYDGGIQAFVEYLNRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDGF
QENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLT
AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFSDFLLENPMDAKIVVGKIIDAAR
AREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRNRKN
QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPEKLRYHSIIIMTDAD
VDGSHIRTLLLTFFYRQMPEIVERGYIYIAQPPLYKVKKGKQERYIKDDPALVEYLTSLA
LNNAALYTSEDASAIEGEALEQIVQDYQNTVKVIERLKRKYPNTVMERLIYQSELKVEDL
SNEAKVIEWTKELVDDLVERDEDATIFHAGTEHDAERNLYFPVVNIRQHGVDKAHVLHYD
FIASRDYQRIAVTGTKIANILKEGAYVQRGEKTKPVDNFVDALEWLIAESKRGIYIQRYK
GLGEMNPSQLWETTMDPSARRMLQVTIEDAVAADQLFATLMGDQVEPRREFIETNALRVV
NLDV
NT seq 2355 nt   +upstreamnt  +downstreamnt
atgtatataggggacaccgatgatggcacaggcttacaccacatggtgtttgaggtcgtt
gataactctatcgatgaagccttagcaggtcattgtgatgatatttatgtaacgattcac
ttagacggttcagtctctgtaagagataacggtcgtggtatcccaacttctatccatgaa
gaagaaggtgtgtctgctgccgaggttatcatgacggtacttcatgccggtggtaagttt
gatgataactcttacaaagtatcaggtggcttacacggtgttggtgtatcggtagtaaat
gcattatcagaaaaactaactcttactattcgtcgtgaaggcaaattgcacgagcaaact
tacagcatgggcgtacctaacgctccattaactgttattggcgatgctgacactacgggt
actgaactgcgtttttggccaagtggcgaaacatttacaaaccttgattttcattatgat
attttagctaagcgtttacgcgagctatcgtttttgaactctggtgtaagcatcatctta
tctgatgaacgcgaagaaaataaaaccgaccactttaaatatgatggcggtattcaagcg
tttgttgaatacttaaaccgcaataaaacacctgtacataaaggtgtattccattttact
cacgagcgtgaagaagatgggattagcgttgaagtttcaatgcagtggaacgatggcttc
caagaaaacatttactgttttactaataacattccacaacgtgatggtggtactcactta
gccggctttagatctgcgctaacacgtacacttaataactacatggaaaaagaaggcttt
aacaaaaaagctaaaacaaccagtaacgcaacgggcgatgatgcgcgtgaaggcttaact
gcggttgtaagtgttaaagtacctgatcctaagttctcatcacaaactaaagacaagcta
gtatcaagcgaagttaaatctgcggttgagcaagcaatggctgaaaagttttctgatttc
ttattagaaaacccaatggatgccaaaattgttgttggtaaaattattgatgcagcacga
gcacgtgaagcggcgcgtaaagcccgtgaaatgactcgtcgtaaaggcgctatggattta
gcaggtttaccaggtaaattagctgactgccaagaaaaagacccatcattatctgaacta
tacatagtggagggtgactcagctggcggttcagccaagcagggtcgtaaccgtaaaaac
caagcaattttgccacttaaaggtaaaatcttgaacgtagagaaagcacgctttgataag
atgctttcttcacaagaagtagcaacgctaataacagccctaggttgtggtattggccgt
gatgaatatgacccagaaaaactacgttaccacagcatcattatcatgaccgatgcggac
gtggatggttctcacattcgtacattgctactaacgttcttctatcgccaaatgccagaa
attgttgagcgtggttatatttacattgcacaaccaccactttataaagtgaaaaaaggt
aagcaagagcgttatattaaagacgatcctgcacttgtagagtacctaacatcacttgca
ctaaataatgcagcgctttacacaagcgaagatgcaagtgcaattgaaggtgaagcgctt
gagcaaatagtacaagattaccaaaacacagttaaagtcattgagcgcttaaaacgtaaa
taccctaacacggtaatggaacgtttgatttaccaaagcgagttaaaagtagaagactta
tctaacgaagctaaggtaattgagtggacgaaagagctagttgacgacttagttgaacgt
gatgaagatgcgacaattttccatgcgggtactgagcatgatgcagagcgcaacttgtac
ttcccggttgtgaatattcgtcagcacggcgtggataaagcacacgtattacactacgac
tttattgcatctcgtgactaccaacgcattgctgtgactggcacgaagatcgcaaacatc
ttaaaagaaggcgcatatgttcaacgtggtgagaaaacaaaacctgttgataactttgtg
gatgctttggaatggttgatcgctgaatctaagcgcgggatctacattcagcgctataaa
ggattaggcgaaatgaaccctagccaactgtgggaaaccacaatggatccttcagctcgt
cgtatgttacaagtaacaattgaagatgctgtagcggcagatcaattgtttgcaacatta
atgggcgatcaagttgagcctcgtcgtgagtttatagaaaccaacgcacttcgcgtagtt
aacttagacgtgtaa

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