Pseudoalteromonas agarivorans: PAGA_a0005
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Entry
PAGA_a0005 CDS
T06137
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
paga
Pseudoalteromonas agarivorans
Brite
KEGG Orthology (KO) [BR:
paga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paga03032
]
PAGA_a0005 (gyrB)
03400 DNA repair and recombination proteins [BR:
paga03400
]
PAGA_a0005 (gyrB)
Enzymes [BR:
paga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
PAGA_a0005 (gyrB)
DNA replication proteins [BR:
paga03032
]
Prokaryotic type
DNA Topoisomerases
PAGA_a0005 (gyrB)
DNA repair and recombination proteins [BR:
paga03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PAGA_a0005 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
ATC80628
UniProt:
A0A290RIE6
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All DBs
Position
I:3862..6216
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AA seq
784 aa
AA seq
DB search
MYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDDIYVTIHLDGSVSVRDNGRGIPTSIHE
EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLTLTIRREGKLHEQT
YSMGVPNAPLTVIGDADTTGTELRFWPSGETFTNLDFHYDILAKRLRELSFLNSGVSIIL
SDEREENKTDHFKYDGGIQAFVEYLNRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDGF
QENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLT
AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFSDFLLENPMDAKIVVGKIIDAAR
AREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRNRKN
QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPEKLRYHSIIIMTDAD
VDGSHIRTLLLTFFYRQMPEIVERGYIYIAQPPLYKVKKGKQERYIKDDPALVEYLTSLA
LNNAALYTSEDASAIEGEALEQIVQDYQNTVKVIERLKRKYPNTVMERLIYQSELKVEDL
SNEAKVIEWTKELVDDLVERDEDATIFHAGTEHDAERNLYFPVVNIRQHGVDKAHVLHYD
FIASRDYQRIAVTGTKIANILKEGAYVQRGEKTKPVDNFVDALEWLIAESKRGIYIQRYK
GLGEMNPSQLWETTMDPSARRMLQVTIEDAVAADQLFATLMGDQVEPRREFIETNALRVV
NLDV
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgtatataggggacaccgatgatggcacaggcttacaccacatggtgtttgaggtcgtt
gataactctatcgatgaagccttagcaggtcattgtgatgatatttatgtaacgattcac
ttagacggttcagtctctgtaagagataacggtcgtggtatcccaacttctatccatgaa
gaagaaggtgtgtctgctgccgaggttatcatgacggtacttcatgccggtggtaagttt
gatgataactcttacaaagtatcaggtggcttacacggtgttggtgtatcggtagtaaat
gcattatcagaaaaactaactcttactattcgtcgtgaaggcaaattgcacgagcaaact
tacagcatgggcgtacctaacgctccattaactgttattggcgatgctgacactacgggt
actgaactgcgtttttggccaagtggcgaaacatttacaaaccttgattttcattatgat
attttagctaagcgtttacgcgagctatcgtttttgaactctggtgtaagcatcatctta
tctgatgaacgcgaagaaaataaaaccgaccactttaaatatgatggcggtattcaagcg
tttgttgaatacttaaaccgcaataaaacacctgtacataaaggtgtattccattttact
cacgagcgtgaagaagatgggattagcgttgaagtttcaatgcagtggaacgatggcttc
caagaaaacatttactgttttactaataacattccacaacgtgatggtggtactcactta
gccggctttagatctgcgctaacacgtacacttaataactacatggaaaaagaaggcttt
aacaaaaaagctaaaacaaccagtaacgcaacgggcgatgatgcgcgtgaaggcttaact
gcggttgtaagtgttaaagtacctgatcctaagttctcatcacaaactaaagacaagcta
gtatcaagcgaagttaaatctgcggttgagcaagcaatggctgaaaagttttctgatttc
ttattagaaaacccaatggatgccaaaattgttgttggtaaaattattgatgcagcacga
gcacgtgaagcggcgcgtaaagcccgtgaaatgactcgtcgtaaaggcgctatggattta
gcaggtttaccaggtaaattagctgactgccaagaaaaagacccatcattatctgaacta
tacatagtggagggtgactcagctggcggttcagccaagcagggtcgtaaccgtaaaaac
caagcaattttgccacttaaaggtaaaatcttgaacgtagagaaagcacgctttgataag
atgctttcttcacaagaagtagcaacgctaataacagccctaggttgtggtattggccgt
gatgaatatgacccagaaaaactacgttaccacagcatcattatcatgaccgatgcggac
gtggatggttctcacattcgtacattgctactaacgttcttctatcgccaaatgccagaa
attgttgagcgtggttatatttacattgcacaaccaccactttataaagtgaaaaaaggt
aagcaagagcgttatattaaagacgatcctgcacttgtagagtacctaacatcacttgca
ctaaataatgcagcgctttacacaagcgaagatgcaagtgcaattgaaggtgaagcgctt
gagcaaatagtacaagattaccaaaacacagttaaagtcattgagcgcttaaaacgtaaa
taccctaacacggtaatggaacgtttgatttaccaaagcgagttaaaagtagaagactta
tctaacgaagctaaggtaattgagtggacgaaagagctagttgacgacttagttgaacgt
gatgaagatgcgacaattttccatgcgggtactgagcatgatgcagagcgcaacttgtac
ttcccggttgtgaatattcgtcagcacggcgtggataaagcacacgtattacactacgac
tttattgcatctcgtgactaccaacgcattgctgtgactggcacgaagatcgcaaacatc
ttaaaagaaggcgcatatgttcaacgtggtgagaaaacaaaacctgttgataactttgtg
gatgctttggaatggttgatcgctgaatctaagcgcgggatctacattcagcgctataaa
ggattaggcgaaatgaaccctagccaactgtgggaaaccacaatggatccttcagctcgt
cgtatgttacaagtaacaattgaagatgctgtagcggcagatcaattgtttgcaacatta
atgggcgatcaagttgagcctcgtcgtgagtttatagaaaccaacgcacttcgcgtagtt
aacttagacgtgtaa
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