Pseudoalteromonas agarivorans: PAGA_a0297
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Entry
PAGA_a0297 CDS
T06137
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
paga
Pseudoalteromonas agarivorans
Pathway
paga03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paga00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PAGA_a0297 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paga03021
]
PAGA_a0297 (rpoB)
03400 DNA repair and recombination proteins [BR:
paga03400
]
PAGA_a0297 (rpoB)
Enzymes [BR:
paga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PAGA_a0297 (rpoB)
Transcription machinery [BR:
paga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PAGA_a0297 (rpoB)
DNA repair and recombination proteins [BR:
paga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PAGA_a0297 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ATC80881
LinkDB
All DBs
Position
I:290122..294147
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AA seq
1341 aa
AA seq
DB search
MAYSYSEKKRIRKDFGKRPQVLDIPFLLSTQLESFKKFLVPDADGDHGLEAAFRSVFPIK
SYSGNSELQYVSYRIGEPVFDVKECQIRGVTYSAPLRVKLRLVVMDKEAPGTVKDIKEQE
VYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKTHSSGKVLYNARVIPYRG
SWLDFEFDAKDNLYVRIDRRRKLPASIILRALEYSSEEILDMFFDTTAFEVTDGKVLMEL
VPSRLRGETAAFDIKGEDGEVLVESGRRITARHIKSIEKKGINQLEVPHEYIIGRIVAKN
YVDESTGEVIANANDELSLELMAELVKAGHTKIETLYINEVDSGAYMSNTLNIDSSSNRL
EALVEIYRMMRPGEPPTKDAAEALFENLFFSEERYDLSTVGRMKFNSRVGYDTDTGPGTL
SKEDIVSVMKVLIAIRNGQGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPYRKVVDGVVT
DEVDYLSAIEEGQFVIAQANSNLTETNEFVDELIPCRHKGESTFMGRMDQQYMDVSPQQV
ISVAAALIPFLEHDDANRALMGSNMQRQAVPTLKADKPLVGTGIELTLAKDSGVTIVAKR
GGEVMYADASRIVVNVHDDERIPGEAGIDIYNLTKYTRSNQNTCINQKPTCMVGEPVTRG
DVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSERVVEEDRLTTIHIQELQCVA
RDTKLGPEEITADIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKRALEVEDMQLREAKKDF
NEEFRILEAGVLDRARKLLAAAGFDEDNLASLNAEKLLTQSLAQEDKQAELEQLAAQYDE
LKAEYDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIV
PVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQILETHMGLAARGIGERLEEMMKEQRELHE
LREFIKQAYEIGESRQEVDIASFSDDEIRRLADNLKGGLPIATPAFDGAKEDEIKDMLEL
GGYPRSGQVTLYDGRTGDQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHKMEPGMPE
SFNVLLKEIRSLGINIELEEN
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcttattctgaaaagaaacgtatccgtaaggattttggtaaacgtccacaa
gttttggatatacctttcttactgtcgacacagttagaatcgtttaaaaaattcttagtc
ccagacgctgatggcgatcatggtttggaagcagccttccgttctgtgttccctattaaa
agctactcgggaaattctgagcttcaatacgtaagttatcgtattggtgagccagtattc
gatgtaaaagaatgtcaaattcgcggtgtgacttattctgctccacttcgcgtgaaactg
cgtcttgtagttatggacaaagaagctccaggcacagttaaagacattaaagagcaagaa
gtttacatgggcgaaattccgctcatgactgataccggtacttttgtaatcaatggtaca
gagcgtgttatcgtttctcagctacaccgtagccctggtgtattctttgataacgaccgc
ggtaaaacccattcatcgggtaaagtattatataacgcacgcgttataccttaccgtggt
tcatggttagacttcgaatttgatgcaaaagataacttatatgtacgtatagaccgtcgt
cgtaaattaccggcgtctattattttacgtgcacttgagtactctagcgaagaaatctta
gatatgttcttcgatactaccgcgtttgaagtaactgacggtaaagttcttatggaactt
gtgccttcacgtttacgtggtgaaactgccgcttttgatatcaaaggcgaagacggtgaa
gtacttgttgaaagcggtcgtcgtattacggctcgccacatcaagagcatcgagaaaaaa
ggcattaatcaattagaagtaccacatgagtacatcattggccgtattgtagctaaaaac
tatgttgatgagtcaacaggtgaagttattgcaaacgctaatgacgagctatcactagag
ttgatggctgaattggttaaagcaggtcacactaaaattgagacgttatacatcaatgaa
gtggacagcggcgcttacatgtcaaatacattaaatattgactcgtctagcaaccgttta
gaagcattagtagaaatttaccgcatgatgcgcccaggcgagccaccgacgaaagacgcg
gctgaagccttattcgagaacttattcttctctgaagaacgttatgacttatctactgta
ggtcgtatgaagttcaatagccgtgttggttacgatacagacacaggccctggcacatta
agcaaagaagacatcgtgtctgttatgaaagtattaattgctattcgtaacggtcaaggc
gatgttgatgatattgaccacttaggcaaccgtcgtatacgtagtgttggcgaaatggct
gagaaccaattccgtgttggtctagtacgtgtagaacgtgctgtacgtgagcgtttaagc
ttaggtgaccttgacgcgataatgccacaagatcttattaacgctaagcctatttcggca
gcggttaaagagttcttcggctcgtctcagttatcacagtttatggaccaaaataacccg
ctatcagaagtaacgcataagcgtcgtatttctgcattaggtccgggcggtctaacacgt
gagcgcgctggctttgaagtacgtgacgttcacgtaactcactatggtcgcgtatgtcca
atcgagactcctgagggtccaaacatcggtctaattaactcgttatctacgtacgcacgt
acaaatgattacggtttcttagaaacaccttaccgtaaagtggtagatggtgtagtaact
gatgaagttgattatttatcagccattgaagaaggtcagtttgttatcgcacaggcgaac
tcaaacttaactgaaaccaatgagtttgttgatgaacttattccgtgtcgccacaaaggt
gaatctacctttatgggtcgcatggaccagcagtatatggatgtatcaccacaacaggtg
atctctgtagcggcagcacttatcccgttcctagaacacgatgatgctaaccgtgcattg
atgggttcaaacatgcaacgtcaagcagtaccaacattgaaagcggataagccgttagta
ggtacaggtattgagttaacactagcgaaagattctggtgtaacgattgttgctaaacgt
ggtggtgaagtaatgtacgccgatgctagccgcatcgttgtaaacgtacatgacgatgag
cgtattcctggtgaagcgggcatcgacatttacaaccttactaaatacacacgttctaac
caaaatacatgtattaaccaaaaaccaacgtgcatggttggtgaaccggttactcgtggt
gacgtgttagcagatggtccttcgactgacttaggtgacttagcccttggtcaaaacctt
cgcgtggcattcatgccatggaacggttataacttcgaggattcaatcttactatcagag
cgcgtagttgaagaagatcgtctaacgactatccacattcaagaactacagtgtgttgcc
cgtgatactaaattaggtcctgaagagatcactgcagatatcccgaatgtgggtgagtct
gcgctaggcaagcttgatgaatcaggcgttgtttatattggtgctgaagttaaaggcggc
gatatcctagtaggtaaagtgactccgaaaggcgagacgcaattaacacctgaagagaag
ctactgcgtgctatcttcggcgaaaaagcgtctgacgttaaagacagctctttacgtgta
ccaaactctgtaactggtactgtaattgacgtacaagttttcacccgtgatggtgttgaa
aaagataagcgtgcgttagaagttgaagacatgcagcttcgcgaagcgaagaaagacttc
aacgaagagttccgtattctagaagctggtgtattagaccgtgctcgcaagctacttgct
gcagcaggcttcgatgaagacaacttagcgtcactaaatgctgaaaagctacttactcaa
agccttgcacaagaagacaagcaagctgaacttgagcaactagctgcacagtacgatgag
cttaaagctgaatacgataagaagtttgaaaacaaacgtcgtaaaattactcaaggtgat
gacttagcaccaggcgtacttaagattgttaaagtatacctagctgttaaacgtcgtatc
caaccgggtgataaaatggcgggtcgtcacggtaacaaaggtgttatctcgactatcgta
ccagtagaagatatgccatacgatgataaaggtcgtacggtagatatcgtactaaatcca
ctaggtgtaccatcacgaatgaacatcggtcagatccttgaaacacatatgggtctagct
gcacgtggtattggtgagcgcttagaggaaatgatgaaggaacaacgtgagctacatgag
ctacgtgaattcatcaagcaagcttacgaaatcggcgaatctcgtcaagaagtagatatt
gctagcttctctgatgatgaaattcgtcgtttagctgataacttaaaaggtggtttacca
atcgctactcctgcatttgatggcgctaaagaagacgaaatcaaagacatgctagagctt
ggtggatacccaagaagtggtcaggttacactctatgatggccgtactggcgatcagttt
gaacgtcaagtaactgttggttacatgtacatgcttaaacttaaccacttggttgacgat
aagatgcacgcacgttctactggttcttacagccttgttactcagcagccgctgggtggt
aaagcacagttcggtggccagcgttttggtgagatggaagtatgggcacttgaagcttac
ggtgctgcttacactctacaagaaatgctaacagtgaaatcggatgacgtgaacggtcgt
actaagatgtataaaaacatcgttgatggtaaccataaaatggaaccaggtatgccagaa
tcgttcaacgtattgttgaaagaaatccgctcactgggtatcaacatcgagttggaagaa
aattaa
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