Pantoea ananatis AJ13355: PAJ_2635
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Entry
PAJ_2635 CDS
T01969
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
paj
Pantoea ananatis AJ13355
Pathway
paj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
paj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PAJ_2635 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paj03021
]
PAJ_2635 (rpoD)
Transcription machinery [BR:
paj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PAJ_2635 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HAP1_N
DNA_ligase_A_N
HTH_SUN2
AP_endonuc_2
Eclosion
Motif
Other DBs
NCBI-ProteinID:
BAK12715
UniProt:
A0A0H3L068
LinkDB
All DBs
Position
3189184..3191028
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AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVVEEAP
DADDLMLNENSSDTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLDQYDRVEAGESRLSDLITGFVDPNAEEDLAPTA
THVGSELSEADRNDDEDDDEESDDDSSDDDNSIDPELAREKFSDLRTQYETTRDVIKSKG
RSHAASVAEIQNLSDVFKQFRLVPKQFDYLVNNMREMMERVRTQERLIMKLCIEVCKMPK
KNFITLFTGNETNESWFKAALAMNKPWSEKLLDVQDDVMRSLQKLAQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSES
LRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctcaagcttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccagatgattaacgacatgggcattcaggtggttgaagaagccccg
gacgccgacgatctgatgctgaatgaaaacagctccgatactgacgaagatgccgcggaa
gctgccgctcaggtattatccagcgttgaatctgaaattggccgcaccactgacccggtt
cgcatgtacatgcgtgaaatgggtaccgttgaactgctgacccgcgaaggcgaaatcgac
atcgcgaagcgtatcgaagacggtattaaccaggttcagtgttccgttgctgaatatccg
gaagccattacctacctgctggatcagtacgatcgcgttgaagcaggcgagtcgcgcctg
tcagatttaatcactggctttgttgatcctaacgctgaagaagacctggcaccgaccgcc
actcacgtgggttctgagctgtctgaagccgatcgtaatgacgacgaagatgacgatgaa
gagagcgatgacgacagctctgacgacgataactctatcgatccagaactggcgcgcgag
aagttctcagacctgcgcacgcagtacgaaaccacgcgtgacgtgatcaaaagcaaagga
cgcagccatgctgcctcggttgccgagatccagaacctgtctgacgtctttaagcagttc
cgcctggtaccgaagcagttcgactacctcgtgaacaacatgcgtgaaatgatggagcgt
gtccgtactcaggaacgtttgatcatgaagctgtgtattgaagtgtgcaaaatgccgaag
aaaaacttcattacgctgttcaccggtaacgagactaacgagagctggttcaaagccgca
ctggccatgaacaagccgtggtctgaaaaactgctggacgtgcaggatgacgtgatgcgt
tctctgcagaaactggcccagattgaagaagaaaccggcctgaccatcgagcaggtgaaa
gacatcaaccgtcgtatgtcgatcggtgaagcgaaagcccgccgcgcgaagaaagagatg
gttgaagctaacctgcgtctggtcatttcaatcgcgaagaaatacaccaaccgtggtctg
cagttcctggatctgattcaggaaggtaacatcggtctgatgaaagcggttgataagttc
gaataccgtcgcggctataagttctcaacttatgccacatggtggattcgtcaggcgatt
acccgttctatcgctgaccaggcgcgtaccatccgtattccggtgcatatgattgagacc
atcaacaaactcaaccgtatctcgcgccagatgctgcaggagatgggccgcgagccgacg
ccagaagaactggctgagcgcatgctgatgcctgaagataagatccgcaaggtgctgaag
attgccaaagagcctatctctatggagacgccgattggtgatgatgaagattcacatctg
ggtgattttatcgaagacaccacgctggagctgccgctggactctgccacctctgagagc
ctgcgttctgccacccatgacgtgctggctggcctgaccgcccgtgaagccaaagtgctg
cgcatgcgtttcggcatcgatatgaacaccgaccacacgttagaagaagtgggcaaacag
tttgacgttactcgtgagcgtatccgtcagattgaagcgaaagccctgcgtaaactgcgc
catccgagccgctcggaagtgctgcgcagcttcctcgacgactaa
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