Pseudomonas alloputida: LU682_002280
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Entry
LU682_002280 CDS
T09345
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pald
Pseudomonas alloputida
Pathway
pald03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pald00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LU682_002280 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pald03021
]
LU682_002280 (rpoB)
03400 DNA repair and recombination proteins [BR:
pald03400
]
LU682_002280 (rpoB)
Enzymes [BR:
pald01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LU682_002280 (rpoB)
Transcription machinery [BR:
pald03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LU682_002280 (rpoB)
DNA repair and recombination proteins [BR:
pald03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LU682_002280 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
WJR17680
LinkDB
All DBs
Position
516783..520856
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEK
LSLELVPQRLRGEVAVMDIHDETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVLGR
TTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTLKIDT
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
KVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKIDRMLEEQRKAAELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLKKGVPMATP
VFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccttacctcctggccatccagctggattcgtatcgcgaattcctgcaa
gcgggagcatccaaggatcacttccgcgacgtcggcctgcacgcggccttcaaatcggta
ttcccgatcatcagctactccggcaatgctgccctggagtacgtaggctatcgcctgggc
gaacccgccttcgatgtgaaggaatgtgtcctgcgtggcgtgaccttcgcggtcccactg
cgggtcaaggtgcgcctgatcatcttcgacaaggaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gttatcaacggtaccgagcgtgtgatcgtttcccagctgcaccgttcgcctggtgtgttc
ttcgaccacgaccgtggcaagacccacagctcgggcaagctgctgtactccgctcgcatc
atcccttaccgcggttcctggctggacttcgagttcgacccgaaggactgcgtgttcgtg
cgtatcgaccggcgccgcaaactgccggcctcggtgctgctgcgcgccctgggttacagc
actgaagaagtgctgaacaccttctacaccaccaacgtgttccacatttccggcgaaaaa
ctcagcctggaactggtaccgcagcgtctgcgtggtgaagttgcagtcatggacatccat
gacgaaaccggcaaagtcatcgtcgagcaaggccgccgtattaccgcgcgccacatcaac
cagctcgagaaggccggcgtcaagcaactggacgttccaatggaatacgtcctgggccgc
actaccgccaaggctatcgtgcatccggctaccggcgaaattctcgccgaatgcaacacc
gagatgactaccgagctgctgatcaaggtcgccaaggcgcaggttgtccgtatcgagacc
ctgtacaccaacgacatcgattgcggtccgttcatctctgacactctgaagatcgacacc
accagcaaccaactggaagcgctggtcgagatctaccgcatgatgcgtccaggcgagccg
ccaaccaaggacgcagccgagaccctgttcaacaacctgttcttcagtgccgagcgttac
gatctgtccgccgtaggccgcatgaagttcaaccgtcgtatcggtcgtaccgagatcgag
ggttcgggcgtgctgagcaaggaagacatcgtcgaggttctgaagaccctggtcgatatc
cgtaacggcaaaggcatcgtcgacgacatcgaccacctgggtaaccgtcgcgtacggtgc
gtcggcgagatggccgagaaccagttccgcgttggcctggtgcgtgtcgagcgcgcggtc
aaggaacgcctgtcgatggcggaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccggtagcggcagcggtgaaagagttcttcggttccagccagctgtcccagttcatg
gaccagaacaaccctctctcggagattacccacaagcgccgcgtctccgcactcggccct
ggcggtctgacccgtgagcgtgccggcttcgaagtccgtgacgtacacccgacccactat
ggccgtgtgtgcccgatcgagacccctgaaggtccgaacatcggtctgatcaactccctg
gcggcctatgcccgcaccaaccagtacggcttcctggaaagcccgtaccgcgtggtgaag
gaaggcgttgtcagcgacgacatcgtgttcctgtcggcaatcgaagaggcagatcacgtc
atcgcacaggcttcggccgcgatgaacgacaagaagcaactgatcgatgagctggtagca
gttcgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgtt
tcgccgaagcaggttgtttccgttgcagcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggctgtaccgaccctgcgtgcc
gacaagccgctggtaggtaccggcatggagcgcaacgttgcccgtgactccggtgtctgc
gtggttgctcgccgcggtggtgtgatcgactcggtcgacgccagccgtatcgttgttcgc
gttgccgacgacgaagtggaaaccggcgaagcgggtgtggatatctacaacctgaccaag
tacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgac
aaggttcagcgtggtgacatcatggccgacggcccgtccaccgacatgggtgagctggct
ctgggtcagaacatgcgcatcgcgttcatggcgtggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgttgttcaggaagatcgcttcaccaccatccacattcaggaa
ctgacctgtgtggcgcgtgacaccaagctcggcccagaggaaatcactgcggacatcccg
aacgtgggtgaagccgcactgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagttggcgctggcgacatcctggttggcaaggtcacgccaaaaggcgaaacccagctg
actccggaagaaaaactgctgcgcgcaatcttcggtgagaaggccagcgacgttaaggac
acctccctgcgtgtgccaaccggcaccaagggtactgtcatcgacgtacaggtcttcacc
cgtgatggcgtggagcgcgatagccgcgcgctggccatcgagaagatgcagctcgacgag
atccgcaaggacctcaacgaagagttccgcattgttgaaggtgcgaccttcgagcgtctg
cgttctgccctgaacggccaggtagttgatggtggtgcgggcctgaagaaaggcaccgtg
atcactgacgaggtgctggacggtctggagcacggccagtggttcaaactgcgcatggct
gaagatgcactgaacgagcagctggaaaaggctcagcagtacatcgtcgaccgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggca
ccgggcgtactgaagatcgtcaaggtttaccttgcaatccgccgccgcatccagccgggt
gacaagatggccggtcgtcacggtaacaagggtgtcgtctcggtcatcatgccggttgaa
gacatgccgcacgatgccaacggtactccggttgacgtcgtactgaacccgctgggtgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggccaagggt
ctgggcgagaagatcgaccgcatgctcgaagagcagcgtaaagccgctgagctgcgcgtg
ttcctgaccgaggtctacaacgagatcggcggtcgtcaggaaaacctcgacgagttcacc
gacgaagaaatcctggccctggctaacaacctgaagaaaggcgtgcctatggctaccccg
gtcttcgatggtgccaaggagcgcgagatcaaggccatgctgaagctggccgacctgcca
gagagcggccagatggtgctgttcgatggccgtaccggcaacaagttcgagcgtcctgtg
accgttggttacatgtacatgctcaagctgaaccacttggtggacgacaagatgcacgcg
cgttccactggttcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaagtgtgggcgctggaagcatacggcgcggcatac
accctgcaagaaatgctcacagtgaagtcggacgacgtgaacggccgtaccaagatgtac
aagaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagagatccgttcgctcggtatcgatatcgatctggaaaccgaataa
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