KEGG   Pseudomonas alloputida: LU682_026685
Entry
LU682_026685      CDS       T09345                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
pald  Pseudomonas alloputida
Pathway
pald02024  Quorum sensing
pald03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pald00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LU682_026685 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    LU682_026685 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pald03019]
    LU682_026685 (hfq)
   03036 Chromosome and associated proteins [BR:pald03036]
    LU682_026685 (hfq)
Messenger RNA biogenesis [BR:pald03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     LU682_026685 (hfq)
Chromosome and associated proteins [BR:pald03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    LU682_026685 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: WJR16685
LinkDB
Position
complement(5745377..5745637)
AA seq 86 aa
MSKGHSLQDPYLNTLRKEKVPVSIYLVNGIKLQGSIESFDQFVVLLKNTVSQMVYKHAIS
TVVPARPVRLPSPTDSEHGDSEPGNA
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacttgaacaccttgagaaaagaaaaggtc
ccggtatccatttacctggtcaacggtatcaaactgcagggctcgatcgaatcgttcgac
cagttcgtggtattgctgaagaacaccgtcagccagatggtctacaagcacgccatctcg
accgtagttccggcccgtccggtccgcctgccaagcccgaccgacagcgagcacggcgac
agcgagccaggcaacgcctga

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