Paracoccus alcaliphilus: JHW40_07265
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Entry
JHW40_07265 CDS
T08960
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
palp
Paracoccus alcaliphilus
Pathway
palp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JHW40_07265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palp03019
]
JHW40_07265
03009 Ribosome biogenesis [BR:
palp03009
]
JHW40_07265
Enzymes [BR:
palp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JHW40_07265
Messenger RNA biogenesis [BR:
palp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JHW40_07265
Ribosome biogenesis [BR:
palp03009
]
Prokaryotic type
rRNA processing factors
JHW40_07265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WCR19457
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All DBs
Position
1434895..1437591
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AA seq
898 aa
AA seq
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MAKKMLIDATHAEETRVVVVDGTKVEEFDFETVNKRQISGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPSADREALMAEERAYAEAQEAEEASNRGRRRRSSTRPQR
AENADETVTAEVAGDEASETDDAGSGDTGTSDAVAHDEAASADAASGNEVAQDDGNGSDD
DSGDSGRSDAGDKDENIESVADEDVSEEINTRRKPRPRRYKIQEVIKVRQIMLVQVVKEE
RGTKGAALTTYLSLPGRYCVLMPNTARGGGISRKITNVADRKKLKDIAAELSVPKGAGLI
IRTAGSQRTRTEIKRDYEYLLRLWEQIRDLTFQSVAPAPIYEEGDLIKRTIRDLYSKEID
EVLVEGERGYRVAKDFMKMIMPSHARNVKHYADPMPLFARYQVESYLGGMFNPVVQLKSG
GYIVIGVTEALVAIDVNSGRATKEGSIEDTALKTNLEASDEVARQLRLRDLAGLIVIDYI
DMEERRNNAAVEKRLKDRLKSDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCH
GTGLIRSDDSLALTILRAIEEEGTRKRSREVLVKAPVAVVNYLINAKREHVAGIEARYGL
SVRLEADPALISPDYAIEKFKTATRVLPEVTHAALSVDASLMAQIDDEDDDDLVSEDQET
DDHHAEADQSADNGDNGAEDENGEGRNRRRRRRRRRRTGDQPDRAEGDDANGDDSNGDVE
DDITVGTETDSPAPEGEAEGDGGNRRRSRGRSRSRRRKPEDAAALPEVVDLRDQVEDARA
EGLPGVNAAKRAEVTAPQETAEPQEQAQPQEQAAEAPVAEPAVEDAPAPAVAELVLEPVV
EDSAVAEAEPEAEAEQPEQAEPAIEPTEAEPAQEQPQPALAEAEDNRPKRRGWWSVGS
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaatgctgatcgacgccacccatgccgaggaaactcgggtggtggtggtg
gacggaaccaaggtcgaagaatttgatttcgagactgtaaacaaaaggcaaatttcggga
aatatctatctggccaaggtgacgcgggtcgaaccctcgttgcaggcggcctttgtggat
tatggcgggaaccggcacggttttctggcctttgccgagattcatcccgattattaccag
atcccctccgccgatcgcgaggcgctgatggccgaggagcgcgcctatgccgaggcgcag
gaggcggaagaggccagcaaccgtggccgccgccgcaggtcatcgacccgtccgcagcgg
gccgagaatgcggatgagaccgtcacggcggaagtcgcgggcgacgaggcgtcggagacg
gatgatgccgggtccggtgacaccgggaccagtgatgccgtggcgcatgacgaggccgca
agcgccgatgccgcatccggcaatgaggtcgcgcaggacgatggcaacggttccgatgac
gattccggcgattcgggtcgcagcgatgccggcgacaaggacgagaatatcgaatcggtg
gccgacgaggatgtctcggaagagatcaacacccgtcgcaagccgcgcccgcgccgctac
aagatccaggaggtcatcaaggtccggcagatcatgctggtccaggtggtcaaggaagag
cgtggcaccaagggcgcggcactgaccacctatctctcgctgcccggccgttactgcgtg
ctgatgcccaataccgcacgcggcggcgggatcagccgcaagatcaccaatgtcgccgac
cgcaagaagctgaaggacatcgccgccgaactgtcggtgccgaagggcgccgggctgatc
atccgcaccgcgggcagccagcgcacccggaccgaaatcaagcgcgattacgaatatctg
ctgcgcctgtgggaacagatccgcgacctgaccttccagtcggttgcccctgcgccgatc
tatgaggaaggcgatctgatcaagcgcaccatccgcgatctctacagcaaggagatcgac
gaggtgctggtcgagggcgaacgcggctatcgcgtggccaaggacttcatgaagatgatc
atgccgtcccatgcccgcaacgtgaagcattacgccgacccgatgccgcttttcgcccgc
tatcaggtggaaagctatctgggcggcatgttcaacccggtggtgcagctgaagtccggc
ggctatatcgtcatcggcgtgaccgaggcgcttgtcgccatcgacgtgaactcgggccgg
gcgaccaaggaaggctcgatcgaggatacggcgctcaagaccaacctcgaggcctcggat
gaggtggcgcgccagttgcgtctgcgcgatctggccgggctgatcgtcatcgactatatc
gacatggaagagcgtcgtaacaacgccgctgtcgagaagcgtctgaaggaccggctgaaa
tcggaccgtgcgcggattcaggtgggccgcatctcgggcttcggcctgatggagatgagc
cgccagcgcctgcgccccggcatgctggaatcgaccacgcagccctgcgcccattgtcac
ggcaccggcctgatccgttccgatgacagccttgcgctgaccatcctgcgcgccatcgag
gaagagggcacccgcaagcggtcgcgcgaagtgctggtcaaggcgccggtcgcggtcgtc
aactatctgatcaacgccaagcgcgaacatgtcgccgggatcgaggcgcgctatggcctt
tcggtccggctggaggccgatccggcgctgatctcgcccgattacgccatcgaaaagttc
aagaccgcgacccgtgtgctgcccgaagtgacccatgccgcgctgtccgtcgatgccagc
ctgatggcgcagatcgacgacgaggacgacgacgatctggtcagcgaggatcaggagacc
gacgatcaccacgccgaggccgatcagtcggccgataatggcgacaatggtgccgaggac
gagaatggcgagggccgcaatcgtcgtcgccggcggcgcaggcggcggcggacgggcgat
cagcccgaccgcgcggaaggcgatgacgctaatggcgacgactccaatggcgatgtcgag
gatgacatcaccgtcgggaccgaaaccgacagccccgcccccgaaggcgaggcggaaggc
gacggcggcaaccggcgccgttcgcgcggccggtcacgctcgcgtcgccgcaagcccgag
gatgccgccgcgctgcccgaggtcgtggatctgcgcgatcaggtcgaggatgcccgggcc
gaggggctgccgggtgtgaacgccgcgaaacgcgccgaagtgaccgcgcctcaggaaacg
gctgaaccgcaggaacaggcgcaaccgcaggaacaggccgcagaagcgccggtcgcggaa
cccgcggtcgaggatgcgcctgccccggctgtcgccgaactcgtcctggaaccggtggtc
gaggacagcgcagtcgccgaagcggaacctgaagccgaggccgaacagcccgagcaagcg
gaacccgcaatcgagccgaccgaggccgagcccgcgcaggaacagcctcaacccgccctt
gccgaggccgaggacaaccggcccaagcgccgcggctggtggtcggtcggaagctga
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