Populus alba (white poplar): 118031831
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Entry
118031831 CDS
T07314
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118031831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118031831
Enzymes [BR:
palz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
118031831
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
118031831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
nSTAND3
CbiA
AAA_22
DUF1611
AAA_29
ATP_bind_1
FtsK_SpoIIIE
SRPRB
ABC_tran
Motif
Other DBs
NCBI-GeneID:
118031831
NCBI-ProteinID:
XP_034892216
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All DBs
Position
17:11605495..11611570
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AA seq
428 aa
AA seq
DB search
MAYGGAGTASATRQVKLEKESELRIEVANDTPLRLRLLNGTAEIFGTELPPQIWLTFPPH
FKFAVFTWYGATIEMDGSTETDYTADETPMVSYVNVHAVLDGRRNQAKASPESSQGPRVI
VVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITAPGCIAATPIELPIDPVEGI
SLEMPLVYFYGHTTPSQNVDLYKALVKELAQILERQFTGNAESRASGMVINTMGWIEGVG
YELLLHAIDTFNANVVLVLGQEKLFSMLRDVLKSKPNVDVLKLQKSGGVVSRSSKFRQKS
RSYRIREYFYGIANDLSPHSNIANFSDLFVYRIGGGPQAPRSALPIGADPVANPLRVAPV
NIDRDLLHVVLAVSYAQEPDQIVSSNIAGFIYITDIDLQRRKITYLSPTAGELPSKYLVM
GTLTWLET
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcttacggtggtgcaggcacggcctcagcgacaaggcaagttaagttagagaaagag
agcgagctgagaatcgaagtagctaacgacactccacttcgcttaagactcctaaacggc
accgcagagatctttggcaccgaacttccccctcaaatctggctcaccttccctcctcac
ttcaaattcgctgtttttacttggtatggagccacaattgagatggatggttctacggaa
accgattatacagctgatgagactcctatggttagttatgtaaatgtgcacgctgtgctc
gatggacgaagaaaccaggctaaagcatctcctgaatcttctcagggccctagggtgatt
gttgttggacctacagattcaggaaagagtacattgtcgaggatgcttctcagttgggca
gctaaacaaggttggaagcctacttttgtggacttggatataggccaaggatctataact
gctcctggatgcattgctgccacccccattgagttgcctattgatccagtcgaaggcatt
tcacttgaaatgcctcttgtttacttctatggccacacaactcccagccaaaatgtggat
ctgtacaaagcacttgtaaaggagcttgctcaaatattggaaagacaatttactggaaat
gctgaatctcgcgcgtcaggcatggtgattaacaccatgggatggatagaaggtgtaggc
tatgagttgcttcttcatgcaattgatacattcaatgctaatgtggtcttggttttgggt
caggaaaagcttttcagcatgctccgggatgtgctaaagagcaagcctaatgtggatgtt
ctgaaacttcaaaagtcaggtggtgttgtttccaggagttcaaaattccgccagaagtct
agaagttacaggattagggaatatttctatggcattgcaaatgatctttctccacattca
aatattgcaaattttagtgatttgtttgtgtatcgaattggtggtggaccacaagcccca
agatcagctctgccaattggggctgaccctgttgccaaccctctgcgagttgcacctgtt
aatattgatcgagatctgctccatgttgttcttgctgtttcgtatgcccaagaacctgat
caaattgtttctagtaacattgctggattcatctacatcacggacattgatcttcaaagg
agaaaaattacatacctttccccaacagcaggggaacttccaagtaaatatttggtcatg
ggaacgttaacatggcttgaaacttga
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