Populus alba (white poplar): 118042137
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Entry
118042137 CDS
T07314
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118042137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118042137
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118042137
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118042137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
DNA_pol3_a_NII
Motif
Other DBs
NCBI-GeneID:
118042137
NCBI-ProteinID:
XP_034905605
LinkDB
All DBs
Position
2:7149080..7169549
Genome browser
AA seq
2397 aa
AA seq
DB search
MIELSSTVPSQIRFLLHSLNEANVDSVFHDLCQFMEYELEGSILTLQTCLDYLKTDLKNM
HLEPVLASVFKFVLDKPNFATVFCQSLKSTEITEDFLETLSNLLKLSVAEKIGTGLALSE
SENADTRMFAKKFCLAKIEELCANPVPMNSVEQIQNIVMFLQRSEGLSKHVDSFMQMLSL
MQSKDVVPFVLTPLISDEWREANFLRNMDLFHGSTDTEFDAILAEMEEEMSLGDIVKELG
YGCTFDVLHCKEILSPFLPLTEVTISKILGTIARNLTGLEDNQSTFSTFGLALGCNITTD
LPQLSSWDIDVLVKTIKQLAPGTNWIQVIENLDHEGFYIPNEEAFSFLMSIYRQTCQDPF
PLHAIYGSLWKNTEGQLSFLKHAVLAPPEVFTFAHSGRQLNYIDSLHGHKLQVGHSNHAW
VCLDLLDMLCQLAERGHASSVRSMLEYPLKHCPELLLLGMSHINTAYSLLQYEVSFMVFP
LIIKSAAGSGMMLYLWHLNPNLVLRGFVDAHNVEPNIMTEILDACQELKILSSVLDTIPF
PSGIRLAALASRKELIDLEKWLGNNLITYKDSFFEECLKFLKEIQPGGSQDFSAKPIHPQ
STIVNLYSETSSSFLKVLKAHTSLVISTQLSEEMERLHVTVMDSNPRLQNGSSADSSTPD
GFSDDVEAEANSYFHQMFSGHLTIDSMVQMLARFKESSVKREQLIFECMIGNLFEEYRFF
PKYPERQLKIAALLFGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFVFGTKALEKFV
DRLIEWPQYCNHILQISHLRGTHAELVAFIERALARISSGHLESDGINNASAAHHHGLSQ
AASVNGESNSINIQQAGQQLSSTLHLQQRHESSLDDRLKASAAPFNETKQFASVAPFNES
KQFLSSSVQSSVAPSSDVSSIQKGTVTSSALLSSPGFVRPSRVTSTRFGSALNIETLMAA
AERRETPIEAPGSEIHDKVSFMINNISVANVEAKAKEFTELLKEQYYPWFAQYMVMKRAS
IEPNFHDLYLKFLDKVNSKALNKEIVQASYENCKVLLGSELIKSSSEERSLLKNLGSWLG
KLTIGRNQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCQNSLAYQPPNPWTMGI
LGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIAPTSLLKDRKREIEGNPDFSNKDVG
ASQPQMLPEVKSGIISPLNHVELPLEVAGPPNSGVHTHMLSQYTSPVHLSSGTLMEDEKL
AALGLSDQLPSAQGLFQATPSQSTFPASQLPTAIPNIGTHVIINQKLNSWGLNVHFQRLV
PAVMDRAIKDIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLA
HVTCKEPLRSSISSQLRNSVQGFSLTSEILEHAVQLVTNDNLDLGCAVIEQAATDKAIQT
IDTEIAQQLQRRKHRDGVGPAFFDANMYTQSSMGVVPEALRPKPGHLTVSQQRVYEDFVR
LPWQNQSSQSSNVIPTGSASSGATGPASAYGSVSLDVASEAIESNSAALLSAASIHSATA
DGVIQQSFENNSTSASISATTSSELISVESSDVVKEAGVSSQPSSSSVASERVGSSIADA
SLNTRDALDKYQIIAQKLETLVTSDSREAEIQGLVAEVPEIISRCVSRDEAALAVAQKVF
KGLYENASNSFHVNACLAILAAIRDVCKLVVKELTSWVIYSDEERKFNKDITLGLMRSEL
LNLAEYNVHMAKLIDGGRNKAATDFAVSLIQALIVEESSVISELHNLVDALAKLAAKPGS
SESLQQLIEIARNPGVNAATLTSPALGKEDKTRQSRDKPSNQLIASREDYSNTEPVEPDG
FHEQVSILFAEWYRICELPGANDAASAQYILQLHRNGLLKGDEMTDRFFRVLMELSVAHC
LSSEVINSSVLQSPHQMQNLSFLVIDIYAKLVIAILKVEQGSSKLFPLSKILSITVKFIQ
KDSEDKKNSFNARPYFRLFISWLQDLLSPEPVVDGVNFQILTAFAGAFHNLQPLKVPGFS
YVWLSLVSHRSFMPRLLIGNAQKGWPYVQRLLVDLFQFLEPYLRNAELAVPVHLLYKGTL
RVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPLNMRLPDPSTPNLKIDLLP
EIREPPHILSEVDAALKVKQMKADVDEYLKTRQQGSSFLTELKQRLLLSPSEAASAGTRY
NVPLINSLVLYAGMQAIQQLQARTSHGQSAGNTVPLAVFLVDAALDIYQMLILDLDTEGR
YLFLNAVANQLRYPNNHTHYFSFVLLYLFAESNQEIIQEQITRVLLERLIVNRPHPWGLL
ITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVARSCGGLKPMDDSMVSGWVSESAH
NT seq
7194 nt
NT seq
+upstream
nt +downstream
nt
atgattgagctatcttcaacagtaccgagtcagattcggttcctccttcactccttgaac
gaagctaacgtcgattccgtctttcatgacctctgccagtttatggagtatgaacttgaa
ggaagtattttgacgctccaaacatgtttggattatttgaagactgacttgaaaaacatg
catttggaacctgtacttgcatcggttttcaagtttgttttggacaaacccaatttcgct
accgtgttttgtcagtctttaaaaagtacggagatcactgaagatttcttagagacgctg
tccaatttattgaagttatctgtggctgagaaaattggcaccggtctcgcgctctctgaa
tcagagaatgctgataccaggatgttcgctaagaagttctgtttggctaaaattgaggaa
ttgtgtgcaaatcctgttccaatgaactctgttgagcaaattcagaatattgttatgttc
ctccagcggtctgaggggctttccaagcatgtcgatagctttatgcagatgttgtcgtta
atgcagtccaaagatgttgtcccttttgttttaactccgttgatttctgatgaatggcgt
gaggccaattttttgaggaatatggatctcttccatgggagtacagatactgaatttgat
gctattttagctgaaatggaggaggagatgagcctgggagatattgtgaaagagttaggc
tatggatgcacatttgatgtgttgcactgcaaagaaatattatccccttttctaccactg
acagaagttaccatctctaagatacttggaacaattgcccgcaaccttaccggtcttgag
gacaaccagagcacattttcaacgtttggcttggctcttggttgtaacattacaactgat
cttccacagttaagctcatgggacattgatgtccttgtaaagactatcaagcaacttgct
cctggtactaactggattcaagttattgaaaacctggatcatgaaggattttacatacct
aatgaggaggcattctcctttctgatgtctatatatagacagacatgccaggatccgttc
cctctccatgccatctatgggtctctttggaagaatactgaaggtcagctatcttttctg
aaacatgcagtactggcaccaccagaagtgttcacctttgcccattctggaaggcagctg
aactatattgattctttgcatggccataagcttcaagttgggcattctaatcatgcgtgg
gtgtgccttgaccttttggatatgctttgtcaattggctgagaggggtcatgctagttct
gtccgatcaatgcttgagtatcctctcaaacactgtccagaactgttgcttcttgggatg
tcacatatcaatactgcctacagcctcctccaatatgaagtgtcttttatggttttccct
cttataatcaaaagtgctgctggtagtggtatgatgctttacctctggcatctgaaccct
aatcttgtgttgcggggatttgtagatgctcacaatgttgaaccaaacatcatgactgag
atattggatgcttgccaagagctaaagattttgtcatcggtgttagacacgattcccttt
ccttctggtatcagattagcagccctcgcttcaagaaaagagcttatagaccttgaaaag
tggctgggtaataatttaattacatacaaggattcattcttcgaggaatgtctcaagttt
ctcaaggagattcagcctggtggatcacaggatttttctgccaaacctattcatcctcaa
agtaccattgtgaatctttattcagagactagttcatccttcctgaaggtccttaaagcc
cataccagcttagttatatctacccaactttctgaggaaatggaaaggttgcatgtaaca
gttatggactctaatccaaggctgcagaatggtagctcggcagattcatctacccctgat
gggttttcggatgatgttgaggcagaggcaaactcttatttccatcaaatgttttctggt
catctgacaatagattccatggttcaaatgcttgctcgattcaaggaatcttctgtgaaa
agggaacaattgatttttgagtgcatgattggcaatctatttgaagaatatagattcttc
ccaaaatatccagaaaggcaactaaaaattgctgctcttctttttggttctgttatcaag
caccagcttgttactcatctcactcttgggattgccttgcgtggtgttttagatgcgctt
cggaaacctccagattccaaaatgtttgtgtttgggaccaaggctttggagaagttcgtg
gatcgtttgattgaatggccacagtattgcaatcacatcttacaaatatcgcatctgcgt
ggcactcatgctgagcttgttgctttcattgaacgagcacttgccaggatttcgtcaggg
catttggaatcagatggaattaacaatgcttctgctgctcatcaccatggcttgtctcag
gctgcctcagtaaatggagagtcaaatagcattaacattcaacaggctgggcagcagctt
tcctctacactccatcttcaacagagacatgaaagttctcttgatgaccgtttgaaagca
tctgctgctccatttaatgagactaaacaatttgcatctgtggctccatttaatgagagt
aaacaatttctatcttccagtgtgcaatcttcagttgccccttcaagtgatgtttctagc
attcagaagggtacagttacttcttcggctttgttgtcttctcctggttttgtacgtcct
tcccgagttacctccaccaggtttggctctgcattgaacatcgaaacacttatggctgct
gctgagagaagagaaacaccaatagaggctccaggatcagagattcatgacaaagtatca
ttcatgattaataatatttcagttgcaaatgttgaagctaaagcaaaagaatttactgaa
ttactaaaggagcagtactatccctggtttgcacagtacatggtcatgaaaagagcaagc
attgagcccaattttcatgatttgtacttgaagttccttgataaagttaattcaaaggct
ttaaataaggagattgtccaagcctcgtatgaaaactgcaaggttcttttgggatcagag
cttataaaatctagttcagaagagcgttcattgcttaaaaatttgggaagctggcttggg
aaattaactattggaaggaaccaagttctgagggcacgtgagatagatcccaagtctttg
atcatggaggcatatgagaagggattgatgattgcagttataccatttacatccaaggtt
ctagagccttgccaaaacagtctagcataccaaccccctaatccttggactatgggcatt
cttggattgctggctgagatctactcaatgccgaacttgaaaatgaacctcaaatttgac
atagaggtcttgttcaagaaccttggtgttgatatgaaggacatagcaccaacttctctt
cttaaggaccggaaaagggaaatcgaagggaatcctgatttttccaataaagatgtagga
gcatcccaaccacagatgcttccagaagttaaatctggaattatatctcccctaaatcat
gttgagctaccacttgaggttgcaggcccacctaattctggcgttcatactcatatgcta
tctcagtacacctctcctgtccatctttcttctggtacattgatggaggatgaaaaacta
gctgcattaggcttgtctgatcagctcccttctgcacaaggactattccaagctactcca
tcccagtcaacctttccggctagtcagcttcccacagcaatacctaacattggaactcat
gttattatcaatcagaagttaaattcttggggcttaaatgtgcattttcaaagactggtt
cctgctgtaatggacagagccatcaaagatattgtgtctggtattgttcagagaagtgtt
tctattgcaacacagacaacaaaagagcttgttttgaaggattatgccatggaatccgat
gaaacacgaatatataatgcagcgcacttaatggttgccagtttggctggaagcttagct
catgtcacatgcaaggagccattacgtagttcaatatcaagtcagctaaggaattcagtt
cagggtttctccttaacaagtgaaattctggagcatgctgtgcaacttgttactaatgat
aaccttgatcttgggtgtgcagtgattgaacaagctgctactgataaggccatacaaacc
attgacacggaaatagctcaacaacttcaaagaaggaagcatagagatggtgttggtcca
gcattttttgatgcaaacatgtacacccaaagttctatgggtgttgtacctgaggccctt
cgcccgaagcctggtcacttgactgtctctcaacagcgagtttatgaggattttgttcgg
cttccatggcaaaaccaatctagccagagctcaaatgtcattcctacgggttctgcttct
tctggtgctactggtcctgctagtgcatacggttcagtttcattggatgtggcttcagaa
gctattgaatctaattcagctgcacttcttagtgctgcttcaattcatagtgcgacggct
gatggtgttatccaacaaagttttgaaaacaattccaccagtgcttcaatttcagctacc
acttcctctgaacttatttcagtggaatcctcagatgttgtaaaggaagcgggagtttct
tctcaaccatcatcttcttcagttgcttctgagcgtgttgggagtagcattgcagatgct
tcattgaacactagggatgcgttggacaagtaccagattattgcgcagaagttggagact
ttggtgactagtgattctagagaagctgaaatccaggggttagttgcagaggttcctgaa
atcataagtagatgtgtcagtcgagatgaggctgccttggctgtagcacaaaaggttttc
aagggtttatatgagaatgcatcaaacagttttcacgttaatgcctgccttgctattctg
gctgctattcgtgatgtgtgcaagcttgtggttaaagaactcactagctgggtgatttac
tcagacgaggagcgaaagttcaataaagatattacccttggccttatgcgtagtgaattg
ctcaaccttgcagagtacaatgttcatatggcgaaactcattgatgggggaaggaataag
gctgcaacggacttcgctgtttccctcatccaagctttgattgttgaagaatccagtgtc
atctctgaactccacaatcttgtcgatgctctggccaagctagccgcaaaacctggatct
tccgagtcattacaacagcttattgagattgctaggaatcctggtgtcaatgcagctact
ctaactagtccagctcttggaaaggaggacaagacaagacagtctagagacaaaccttcc
aatcagttgatagctagcagggaagattatagcaacactgaacctgtggaaccggatggt
tttcatgagcaggtttccattctttttgcggaatggtatcggatatgtgaacttcctggt
gcaaatgatgcagcttctgcccagtacatcttgcagctgcatcgaaatggattgctgaag
ggggacgagatgacagatcgcttttttcgcgtactcatggagctctctgttgcacactgc
ttgtcctctgaggtgatcaattccagtgtactgcaatcacctcatcaaatgcagaatctc
tccttccttgttattgatatctatgcaaaattggtcattgcaatcctaaaggtggagcag
ggatcaagtaaactctttcctttgtcaaagatcttgtccatcactgtgaaattcatacaa
aaggattcagaggacaagaaaaattcttttaatgcaagaccatatttcagattgtttata
agttggcttcaagatctcctttccccagagcctgttgtcgatggtgtaaactttcagatc
ttgacagcctttgctggtgcattccacaatctgcagccccttaaagttcctggtttcagc
tatgtatggctctcattggtgagtcataggagtttcatgccaagattgctcataggaaat
gcacagaagggctggccctatgttcagcggttgctggtagacttgtttcagttcctggag
ccctatttgaggaatgctgagctggcagtgccagttcacttgctatataaaggtacactt
agggtgcttttggtgctgctacatgatttccctgagttcctttgtgattaccatttcact
ttctgtgatgtgattcctccaagctgcatacaaatgcgtaatattattcttagtgctttc
cccctcaatatgaggcttccagatccatcgactcccaacttaaagattgatttgcttccg
gaaattagggaacctcctcacattctctccgaggttgatgcagctcttaaagtaaagcag
atgaaagctgatgtagatgagtatctcaagactaggcaacagggttcttcattcctgact
gaattgaagcagagattgctcctttcacctagtgaagctgcatctgccggaacccgttat
aatgtaccgttgatcaactcccttgtcctttatgctggaatgcaggccatccagcagctg
caggcaagaacatctcatggacaatcggcaggaaatactgttcctttagctgtatttttg
gtggatgctgctttagatatctaccagatgcttatactggacctagacacagaaggccga
tacctctttctaaatgctgttgctaatcaactgcgctatccaaataaccacacacattac
ttctcctttgttttgctttacttatttgctgaatcaaaccaggaaattatccaagagcag
attacaagagttcttttggaacgtctaattgttaatcgaccgcatccgtggggccttctg
attactttcatcgagctcatcaagaaccctagatacaacttttggaatcgatcattcata
aggtgcgcaccggagatagagaaactatttgagtcagttgctagatcatgcgggggcttg
aagcccatggatgacagcatggtctctggttgggtttctgagagcgcacattga
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integrated database retrieval system
