Populus alba (white poplar): 118051002
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Entry
118051002 CDS
T07314
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 21-like
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
3.6.4.13
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118051002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118051002
Enzymes [BR:
palz01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
118051002
Spliceosome [BR:
palz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118051002
Complex C
U5 SnRNP specific factors
118051002
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF2608
Motif
Other DBs
NCBI-GeneID:
118051002
NCBI-ProteinID:
XP_034917391
LinkDB
All DBs
Position
Unknown
AA seq
712 aa
AA seq
DB search
MKRSFDDIGVSKTQSKPVFLTKAQREQLALQRRQEEIEQQKKRQQLLLSQTRPSNSESDK
PLSNSDRRDQRDRDREREMERDRDRDRDRERERERERERERERERSSRRNREREREEEAK
AREQARLDKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMN
ILYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKDFRDELRKKEGVEKNPEEAAAQKLK
EEAADRYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWAESKLT
SELLKAVERVGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTCAFVLPMLTYISRLPPM
SEDNEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCE
VVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENE
DEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMTKES
EKSSRLHRLLDELGDKTAIVFVNTKKNADMVAKNLDKHGYRVTTLHGGKSQEQREISLEG
FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT
LGDTDVFYDLKQMLTQSNSSVPPELARHEASKFKPGTIPDRPPRRNDTVFAH
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgctcattcgacgacattggcgtctccaaaacccaaagcaaacctgtcttcttg
accaaagctcaacgcgaacaattagcccttcaacgccgccaagaagaaatcgaacagcaa
aagaaacgccaacaactcctcctctcccaaacccgcccttccaactcggagtccgacaaa
cccctatccaattctgaccgccgtgaccagcgtgacagagaccgagagcgcgagatggag
agagatagagatagagatagagatagggaaagggaaagggaaagggaacgggaacgggaa
cgagaacgcgaacgctcctcgcggcgcaacagagaacgcgaacgtgaagaggaagcaaag
gcgcgtgagcaagccagactggataaattagcggagagagagcgagagaaggagctggat
gcgattaaagagcaatatctagggtcgaaaaagcctaagaagagagtaataaaacctagt
gagaagtttcgcttctcttttgattgggaaaacacggaagacacgtctagagacatgaat
attttgtatcaaaaccctcatgaggcacaacttttgttcggtcgagggtttagggctgga
atggacaggagagagcagaaaaaacttgctgcaaagaatgagaaagattttagagacgag
cttcgaaagaaagaaggtgtagagaagaatccagaagaggcggctgcccaaaaattgaag
gaagaagctgctgataggtatgatacttttgatatgcgtgttgataggcattggtccgag
aagaagcttgaagaaatgactgagagagattggagaatatttagggaagattttaatatt
tcttataagggttccaagattccgcggcccatgaggagttgggcagagagtaagttgact
agcgagttgttgaaggcagtggagagggtagggtataagaagccgtctcctattcaaatg
gcagcgattccactgggattgcaacaacgggatgttatcgggattgctgagactggttca
ggtaagacttgtgcttttgttttgcctatgttgacttatatttctaggttgcctccaatg
agtgaggataatgaggccgaagggccttatgcagttgttatggcacctactcgtgagttg
gcgcaacaaattgaggatgaaactgtcaagtttgcacattatttgggtattaaagttgtt
tctattgtcggtgggcagtctattgaagagcaagggtttaggattaggcaaggttgtgag
gtggttattgctactccaggtcgtttgcttgattgtttggagaggcgttatgctgtgttg
aatcagtgtaattatgttgtgcttgatgaggctgataggatgattgatatgggttttgaa
ccccaggttatgggagtgttggatgcaatgccatcgagcaatttgaagccagaaaatgaa
gatgaagagcttgatgagaagaagatttatcgcaccacttatatgtttagtgctaccatg
ccacctgcagtggagcggcttgcgaggaagtacttgagaaaccctgttgtggtcactatt
ggcactgctgggaaggccactgacttgatatctcaacatgtgataatgacgaaggaatcg
gagaagtccagcaggttgcatagattgcttgatgaacttggagataagactgcaattgtt
tttgttaacactaaaaagaatgcagatatggtggccaagaatttggacaagcatggctat
cgtgtgacaactttgcatggtgggaagtcccaggagcaaagggaaattagccttgaaggt
tttaggaccaaaagatacaatgttcttgtggcaacagatgttgcaggtcgtggtattgat
atacctgatgtggcccatgtcattaattatgatatgcctggaaatattgaaatgtatact
caccgaattggacgaacaggccgtgctggaaagacaggtgtggctacaacattcttaact
cttggggacacagatgttttttatgatctcaagcaaatgcttacccagagtaacagttct
gtgcctcctgagttggctaggcacgaggcttcaaaattcaagccaggaacaattcctgat
agacctcctagacgaaatgacactgtttttgctcactga
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