Profundibacter amoris: BAR1_12950
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Entry
BAR1_12950 CDS
T06831
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pamo
Profundibacter amoris
Pathway
pamo03030
DNA replication
pamo03430
Mismatch repair
pamo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pamo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BAR1_12950
03430 Mismatch repair
BAR1_12950
03440 Homologous recombination
BAR1_12950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pamo03032
]
BAR1_12950
03400 DNA repair and recombination proteins [BR:
pamo03400
]
BAR1_12950
Enzymes [BR:
pamo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BAR1_12950
DNA replication proteins [BR:
pamo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BAR1_12950
DNA repair and recombination proteins [BR:
pamo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BAR1_12950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
DUF655
Motif
Other DBs
NCBI-ProteinID:
AXX98748
UniProt:
A0A347UIS0
LinkDB
All DBs
Position
complement(2603939..2607385)
Genome browser
AA seq
1148 aa
AA seq
DB search
MSDPRFIHLRLHSQYSLLEGAVHVKKLPAMCETARMPAVALTDTNNMFAALEFSVTAKDA
GVQPIVGCQIDVAYDPAQPGEKPRNPAAIVLLSQNERGYENLMKLNSCLYLDKHGVLPQV
TVEELAQYSEGLICLSGGPEGPVGKLLQSAQEPKAQALMQRLAGIYPDRLYVELQRHPGE
GGQCTEAERATERGFVEMAYAMDLPLVATNDVYFPKPDMFEAHDALLCIADGAYVDQQEP
RRRLTPQHYFKSQEEMITLFADLPEAVANTVEIAKRCAFATYRRAPILPKFADDEVAELR
RQAAEGLKGRLKVIPHAASVEEYEKRLEFELDIIEGMGFPGYFLIVADFIKWAKDHNIPV
GPGRGSGAGSLVAYALTITDLDPLRYNLLFERFLNPERVSMPDFDIDFCMDRREEVIRYV
QEKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKLIPVEGVKPMSIEKALA
EEPRLREEAKSEEVIERLLNYGQQVEGLLRNASTHAAGVVIGDRPIDELVPLYQDPRSDM
PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNALDLLKLRGVDIDIGQIPLDDEKTYKLYA
SAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPMENIPTYCEVKNGLKERES
VHPLIDHLLEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFE
KGAMENGVDKKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQTGWLKANYPVEFMAGVMN
CDIHLTDKLGIYKEEITKGLGLEIVLPCVNTSDATFSVADGKVVYGLGGLKNVGVEAMRL
IVEARGETPFVSLFDFARRVDMKRVGKRPLEMLVRAGAFDVLDRNRARVFASLEALVSYS
AAIHEQRNSNQVSLFGEAGDDLPEPRLATVEDWLPNERLAEEHKAVGFYLSGHPLDDYMV
PLKRKNVMTLTEVERKAERGACVVKMCGAVASKQERKSARGNRYAFVSLSDPTGLYEVTV
FSDTLEAAGDLLNAGSNVVLSVEATMESDQLKLLARGVQAVDGVAAEAGSMGLRVFIDRA
EAVKSVSSVLERAAKDGTSRSGGPVVFCLIDASLPGEVELSLAKDYPVNPQIKGAIKSLG
GVITVEEC
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacccccgattcatccatttgcgtttgcacagccagtattccctgctggaaggc
gccgtgcatgtcaaaaagctgcccgcgatgtgtgaaacggccaggatgcccgccgtggcg
ctgaccgacaccaacaacatgtttgccgcgctggaattttccgtcaccgccaaagacgcg
ggcgtgcagccgattgtcggctgtcagatcgacgtggcctatgaccccgcccaacccggc
gaaaagccccgcaaccccgctgccatcgtgctgctgtcccagaacgagcgcggttatgaa
aacctgatgaagctgaactcctgcctctatctggacaaacacggtgtcctgccgcaggtc
acggtggaggaactggcgcaatattcggagggcctgatttgtctgtccggcggccccgaa
ggccccgtcggcaaactgctgcaatcagcgcaagagccaaaagcacaggccctgatgcag
cggctggccggcatctatcccgaccggctctatgtcgaactgcagcgccaccccggcgag
ggtggtcaatgcaccgaagccgagcgcgccaccgagcgcggctttgtcgaaatggcctat
gcgatggacctgccgctggttgccaccaacgatgtgtatttccccaaacccgatatgttt
gaagcccacgacgccctgctgtgcatcgccgatggggcctatgtggatcagcaggaacca
cgccgccgcctgacgccacagcattatttcaagtcgcaagaggaaatgatcacccttttc
gccgacctgcccgaagccgttgccaacactgtcgaaatcgccaaacgctgtgcctttgcc
acctatcgccgcgcgccgatcctgccgaaattcgccgatgacgaggtcgccgaattgcgc
cgtcaggccgccgaggggttgaaagggcgactaaaggtcattccgcatgcagcgtcggtg
gaagaatacgaaaaacggctggaattcgagctggatatcatcgaaggcatgggattcccc
ggatatttcctgatcgttgctgatttcatcaaatgggccaaggaccacaatattccggtc
gggccgggtcgtggctcgggggcgggtagccttgtggcctacgcgctgaccatcaccgac
cttgatccgctgcgctataacctgctgttcgaacggttcctgaatcccgaacgtgtgtcg
atgcccgacttcgacatcgacttttgcatggatcgccgcgaagaagtgatccgctatgtg
caggaaaaatacggccgtgaccgtgtggggcagatcatcactttcggcgcactgctatcc
aaggccgccgtgcgcgatatcggtcgcgttttgcagatgccttatgggcaggtggatcgc
ctgtccaaactgattccggtcgagggcgtcaagccgatgtcgatcgaaaaggcgctggcc
gaagagccccgcctgcgcgaagaggccaagtccgaagaagtgatcgaacgcctgctgaat
tacggccagcaggtcgaggggttgcttcgcaatgcctcgacccacgcggccggcgtggtg
atcggcgatcggccgattgacgagttggtgccgctgtatcaggacccgcgttccgacatg
cccgcgacccagttcaacatgaaatgggtggaacaggccggtctggtgaaattcgacttt
ctgggcctgaaaaccctgaccgtcatccagaacgcgctggatctgctgaaactgcgcggt
gtggacatcgacatcgggcagatcccgctggatgatgaaaagacctataagctctatgcc
agcgccaaaacggtcgccgtgtttcaggtggaatccagcggcatgatggacgcgctaaag
cgcatgaaacccacctgtatcgaggacatcgtggcgctggtggcgctgtatcgtcctggc
ccgatggaaaacatcccgacctattgcgaggtcaagaacgggttgaaagaacgcgaatcc
gttcatccgctgatcgatcatttgctggaggaaacgcagggcattatcgtttatcaggaa
caggtgatgcagatcgctcaggtgatggccggctacagccttggtggtgcggatttgctg
cgtcgcgcgatgggtaaaaagatcgccgaggagatggccaaggagcgccccaaattcgaa
aaaggcgcgatggaaaacggggtggacaagaagaaggccagcgaggtgtttgacctgttg
gaaaaattcgccaactacggtttcaacaaatcccacgcggcggcttatgcggtggtgtca
tatcaaaccggctggctaaaggcgaattacccggtcgaattcatggccggcgtgatgaat
tgcgacatccacctgaccgacaaactgggcatctacaaagaggaaattaccaaagggctg
gggctggaaattgtgctgccctgcgtgaatacttcggatgctacattcagcgtggccgat
ggtaaggtggtctatggccttggcgggttgaaaaacgtcggggtcgaggcgatgcgcctg
atcgtcgaggcacgcggtgaaactccgtttgtgtcgctgttcgatttcgcccgccgcgtt
gacatgaaacgcgtgggcaaacgcccgctggaaatgctggtccgtgccggtgcctttgac
gtgctggaccgcaaccgcgcgcgggtgtttgccagcctagaagcgctggtgtcctattcc
gccgcgatccatgagcagcgcaattcaaatcaggtgtccctatttggcgaagcgggggat
gatctgcccgaaccgcgccttgccactgtcgaggactggttgcccaatgaacggctggcc
gaggaacacaaggccgtcggtttttacctgtccggccatccgcttgacgactacatggtg
ccgttgaaacgcaaaaacgtgatgaccctgaccgaggtcgaacgcaaagccgaacgcggc
gcttgcgtggtcaagatgtgcggcgcggtggccagcaaacaggaacgcaaatcggcgcgg
ggcaaccgttatgcctttgtgtccttgtccgatccgacgggattatacgaggtcacggtg
ttttccgacaccctggaggccgcaggtgatttgctgaacgcgggcagcaacgtggttcta
agcgtcgaggcgacgatggaatccgatcagttgaaactgctggcacgcggggtgcaggcg
gtggatggtgtggctgcggaagccggatcaatgggattgcgcgtgtttatcgaccgcgcc
gaggcagtaaaatccgtatcctcggtgttggagcgggcagccaaagacggcacatcgcgc
agcggcggtccggtggtattctgcctgattgacgcatccctgccaggagaggttgagctt
tccctggcaaaggactatccggtgaacccgcagatcaaaggcgctatcaaaagccttggc
ggagtcatcacggtagaggaatgttag
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