KEGG   Pantoea anthophila: OJ965_05135
Entry
OJ965_05135       CDS       T08866                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
pano  Pantoea anthophila
Pathway
pano02024  Quorum sensing
pano03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pano00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OJ965_05135 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    OJ965_05135 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pano03019]
    OJ965_05135 (hfq)
   03036 Chromosome and associated proteins [BR:pano03036]
    OJ965_05135 (hfq)
Messenger RNA biogenesis [BR:pano03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     OJ965_05135 (hfq)
Chromosome and associated proteins [BR:pano03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    OJ965_05135 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: UZH03517
LinkDB
Position
534543..534854
AA seq 103 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNTGGGSNNYHHGGSNTSAQPQPQQDGDNAE
NT seq 312 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatcattacaagacccgtttttgaacgcactgcgtcgtgaacgtgtt
ccggtttcgatttatctggttaacggtattaagctgcagggtcagattgagtcatttgat
cagttcgtcattttgttgaaaaacacggtaagtcagatggtttataaacacgccatttct
accgttgttccttcacgcccggtttctcaccatagcaataataccggtggcggcagcaac
aattaccatcatggtggcagcaacacatctgcgcagccacagccacaacaagacggtgat
aacgcagagtaa

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