KEGG   Pantoea sp. PSNIH2: PSNIH2_00535
Entry
PSNIH2_00535      CDS       T03514                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
panp  Pantoea sp. PSNIH2
Pathway
panp02024  Quorum sensing
panp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:panp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PSNIH2_00535 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    PSNIH2_00535 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:panp03019]
    PSNIH2_00535 (hfq)
   03036 Chromosome and associated proteins [BR:panp03036]
    PSNIH2_00535 (hfq)
Messenger RNA biogenesis [BR:panp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     PSNIH2_00535 (hfq)
Chromosome and associated proteins [BR:panp03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    PSNIH2_00535 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AIX72403
LinkDB
Position
122334..122645
AA seq 103 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRAVSHHSNNAGGGSNYHHGGNNQAAQSQPQQQDGDSAE
NT seq 312 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagacccgttcctgaacgcactgcgtcgcgagcgtgtt
ccggtttcaatttatttggtgaatggtatcaaactgcaaggtcagattgagtctttcgat
cagtttgtcattttgttgaaaaatacggtcagccagatggtgtataagcacgctatctct
accgtcgttccgtcccgtgcagtctcccaccatagcaacaatgcaggtggcggtagcaac
tatcatcacggcggcaataatcaggcagcgcaatcgcagccgcaacagcaagacggtgac
agcgctgagtaa

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