Pantoea sp. At-9b: Pat9b_1109
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Entry
Pat9b_1109 CDS
T01386
Name
(GenBank) DNA glycosylase/AP lyase, H2TH DNA-binding protein
KO
K05522
endonuclease VIII [EC:3.2.2.-
4.2.99.18
]
Organism
pao
Pantoea sp. At-9b
Pathway
pao03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Pat9b_1109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pao03400
]
Pat9b_1109
Enzymes [BR:
pao01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Pat9b_1109
DNA repair and recombination proteins [BR:
pao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Pat9b_1109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF1778
tRNA_U5-meth_tr
Motif
Other DBs
NCBI-ProteinID:
ADU68431
UniProt:
E6WC15
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All DBs
Position
1248414..1249202
Genome browser
AA seq
262 aa
AA seq
DB search
MPEGPEIRRAADQLAAAMTGKPLTDVWFAFPQLKTYEPALLGATVTAIETRGKALLTHFS
NGLTLYSHNQLYGVWRVVPTGTAPQTARQLRVRLANVDQTILLYSASDIELLNAETLATH
PFLQRVGPDVLDASLTVEAVQERLLSPRFRRRQFSGLLLDQAFLAGLGNYLRVEILWHAQ
LLAQHRALDLHAAQIQALSEALLAVPRHSYQMRGSMKKYHEDAAFRFEVFHRQGKKCRRC
GTLIEKGVLSSRPFYWCPGCQR
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaggaccggagatccgccgcgcggcggatcaactggcggcggcgatgacgggc
aaaccgctcacggatgtgtggtttgcctttccgcagctgaaaacttacgaaccggcgcta
ctgggtgcaaccgtgacggcgattgaaacccgggggaaggcgctactgacccatttctcc
aatggtttgacgctctacagccataaccagctgtacggtgtctggcgcgtggtgccgacc
ggcacagcaccgcaaaccgcccgtcagttgcgggtgcgactggccaatgtcgaccagacc
attctgctctacagcgcgtccgatatcgagctgctcaacgcggagacgctggcgacccat
ccgtttttacaacgtgtcggcccggatgtgctggatgccagcctgacggtggaggcggtg
caggagcggttattgtcgccacgctttcgacggcggcaattcagcggcttgctgctggat
caggcgtttctcgctggcctcggcaactatctacgggtcgagattctgtggcatgcgcag
ttgctggcgcagcatcgtgcgctggatttgcatgccgcacagattcaggcgctgagtgaa
gcgctgctggcggtgccgcgccactcgtatcagatgcgaggcagcatgaaaaaataccat
gaagatgcggcgtttcgctttgaggtgtttcatcgccaggggaaaaagtgccgacgctgt
ggaacgctgatcgagaagggcgtgttgtcatcccgcccgttttattggtgtccggggtgc
cagagatag
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integrated database retrieval system
