Pandoraea apista: SG18_07425
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Entry
SG18_07425 CDS
T03588
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
papi
Pandoraea apista
Pathway
papi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
papi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SG18_07425 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
papi03021
]
SG18_07425 (rpoB)
03400 DNA repair and recombination proteins [BR:
papi03400
]
SG18_07425 (rpoB)
Enzymes [BR:
papi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SG18_07425 (rpoB)
Transcription machinery [BR:
papi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SG18_07425 (rpoB)
DNA repair and recombination proteins [BR:
papi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SG18_07425 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
DNAPolymera_Pol
RnfC_N
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
AJE98062
UniProt:
A0A0B5FDG7
LinkDB
All DBs
Position
complement(3590210..3594316)
Genome browser
AA seq
1368 aa
AA seq
DB search
MHYSFTEKKRIRKSFAKRPTVHKVPFLLATQLASYTSFLQADTLASERKPEGLQAAFSSI
FPIVSHNGFARLEFVSYLLGTPAFDVKECQQRGLTFCSALRAKVRLVILDKESPNKPVVK
EVKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFKLMPE
GAQMEFVPERLRGEVARFDITDREGKVIVQKDKRVNAKHIRDLENANTKFISVPEDYLLG
RVLAKNVIDGDTGEVIANANDEITESVLVKLRESGVSDIQTLYTNDLDQGSYISATLRID
ETADQTAARIAIYRMMRPGEPPTEDAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGRDEV
LGPMTLEDDDILATIKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKV
VDGKVTDQIDYLSAIEEGRYVIAQANASIGENGELTDELVSSREAGETLMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSGT
TVQAFRGGVVDYVDAGRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVEVG
DKVARGDVIADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLSRLDESGIVYIGAEVEAGDVMVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK
GYRLDLNDQLRIVEGDAFQRLERFLVGKTANGGPKKLAKGTKLTKEYLADLDRYHWFDIR
LADDEAAQQLEQIKESIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADIVLNPLGVPSRMNVGQILESHLGWAA
KGLGWRIGEMLQAHTKVQEVRKFLTKIYNESGQQEDIDSLSDDEIMSLARNLQNGVPFAT
PVFDGAHEEEIRRMLDLAFPDHIAKELGMTPSKNQVTLFDGRTGEAFERPVTCGFMHMLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERG
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcactattccttcaccgagaagaaacgcattcgcaagagttttgcgaagcgtccgacc
gtgcacaaggtgccgtttttgctggccacccagctcgcctcgtacacatcgttcttgcaa
gccgatacgcttgcatcggagcggaagccggagggtctgcaagcagccttctcctccatt
ttcccgatcgtttctcacaacgggttcgcacgcctggagtttgtcagctatttgcttggt
actcccgcgttcgatgtcaaggaatgtcaacagcgcggcctgaccttttgctcggctctg
cgcgccaaggttcgtctggtgattctcgacaaggaatcgcccaacaagccggtagtcaag
gaagtgaaggaacaggaagtgtacatgggcgaaattccgctcatgacctcgacgggttcc
ttcgttatcaatggcacggaacgtgtcatcgtctcgcagctgcaccgttcgccgggcgtg
ttcttcgaacacgacaagggcaagacgcacagctcgggtaagctgcttttctccgcgcgt
atcatcccctaccgcggctcgtggctggacttcgaattcgatccgaaggacatcctgtac
ttccgcgtcgaccgccgtcgcaagatgccggtcacgatcctgctcaaggcgattggcctg
acgccggaacagatcctcgccaacttcttcgtgttcgacaacttcaagctgatgccggaa
ggcgcacagatggagttcgtgccggagcgtctgcgcggtgaagttgcgcgtttcgacatt
acggatcgcgaaggcaaggtcatcgtccagaaggacaagcgcgtcaacgccaagcacatc
cgtgatctggagaacgccaacaccaagttcatctcggtgccggaagactacctgctcggc
cgtgtgctcgcgaagaacgtgatcgatggcgataccggcgaagtgatcgccaacgccaac
gacgaaatcaccgaaagcgtgctggtcaagctgcgcgagtcgggcgtgtcggacatccag
acgctgtacacgaacgatctggatcagggttcgtacatctcggccacgctgcgtatcgac
gaaaccgccgaccagacggccgcgcgcatcgcgatctatcgcatgatgcgcccgggcgaa
ccgccgaccgaagatgcggtcgaggccctgttcaaccgtctgttctacagcgaagaagcg
tacgacctgtcgaaggtgggtcgtatgaagttcaaccgtcgtgttggccgtgacgaagtg
ctcggaccgatgacgctggaagacgacgacattctcgcgacgatcaagatcctggtggat
ctgcgtaacggccgcggcgaagtcgacgatatcgaccacttgggtaaccgtcgtgtgcgt
tgcgtcggcgaactggccgagaaccagttccgcgccggtctggtgcgtgtcgagcgcgct
gtgaaggaacgtctgggtcaggccgagtcggaaaacctgatgccgcacgacctgatcaac
agcaagccgatctcgtcggccattcgcgagttcttcggttcgtcgcagttgtcgcagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgtcgcgtttccgcactgggc
ccgggcggtctgacgcgcgagcgtgcaggctttgaagttcgcgacgtgcatccgactcac
tacggtcgcgtgtgcccgattgaaacgccggaaggtccgaacatcggtctgatcaactcg
ctggcgctgtacgcccgcctgaacgagtacggcttcctcgagacgccgtatcgcaaggtg
gtggacggcaaggtcaccgaccagatcgactacctgtcggccattgaagaaggtcgttac
gtgatcgctcaggcgaacgcgtcgatcggcgaaaacggcgaactgaccgacgaactggtc
tcgtcgcgtgaagctggcgaaacgctgatggtcacgccggaccgcatccagtacatggac
gtggcgccgtcgcagatcgtgtcggtggcagcctcgctgattccgttcctcgagcacgat
gacgcgaaccgtgcattgatgggttcgaacatgcagcgccaggcggtgccttgcctgcgt
ccggaaaaagcggtggtcggtacgggtatcgaacgtacggtggccgttgactcgggtacg
accgtgcaggcgttccgtggcggtgtggtcgactacgtcgatgccggccgtgtggtgatt
cgcgtgaacgatgacgaagccgttgccggtgaagtcggcgtggacatctacaacctgatc
aagtacacgcgttcgaaccagaacaccaacatcaaccagcgcccgatcgtggaagtgggc
gacaaggtggcgcgcggcgatgtgattgccgacggcgcgtcgaccgacctgggtgagctg
gcgctgggtcagaacatgctgatcgcgttcatgccgtggaacggctacaacttcgaggat
tcgatcctgatctcggagcgcgtcgttgcggaagaccgttacacgtcgattcacatcgaa
gagctgaacgtggtcgctcgcgacacgaagcttggacctgaagaaatcacgcgcgacatc
tcgaacctggcggaagtgcaactgagccgtctggacgagtcgggcatcgtgtacatcggc
gcggaagtcgaagccggtgacgtgatggtgggcaaggtcacgccgaagggcgaaacccag
cttacgccggaagaaaagctgctgcgtgcgatcttcggcgagaaggcgtcggacgtgaag
gacacctcgctgcgcgtgccgtccggcatgagcggtacggtgatcgacgtgcaagtgttc
acgcgtgaaggtatccagcgcgacaagcgcgctcaacagatcatcgacgatgaactgaag
ggctaccgcctggacctgaacgaccagctgcgtatcgtggaaggcgatgcattccagcgt
ctggagcgcttcctggtgggcaagacggccaatggcggtccgaagaagctcgccaagggc
accaagctcacgaaggaatatctggccgatctggatcgctaccactggttcgatattcgt
ctggccgacgacgaagctgcgcaacagctcgagcagatcaaggaatcgatcgagcagaag
cgtcaccagttcgatctggctttcgaagagaagcgcaagaagctcacgcaaggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtgtacctggcggtcaagcgtcgtctgcag
cctggcgacaagatggccggccgtcacggtaacaagggcgtggtctcgaagatcgtgccg
atcgaggatatgccgtacatggccgatggccgtccggccgacatcgtgctcaacccgctc
ggcgtgccgtcgcggatgaacgtgggtcagattctcgagtcgcacctcggctgggcagcg
aagggtctgggctggcgtatcggcgaaatgctgcaagcgcacaccaaggtccaggaagtt
cgcaagttcctgacgaagatctacaacgagagcggtcagcaagaagatatcgacagcctg
tcggacgacgaaatcatgtcgctggcgcgcaacctgcagaacggtgtgccgttcgctacg
ccggtgttcgatggtgcgcatgaagaggaaatccgtcgcatgctggatctggcgttcccg
gatcacattgcgaaggaactcggcatgacgccgtcgaagaaccaggtcacgctgttcgac
ggccgtacgggtgaagcattcgagcgtccggtcacgtgcggcttcatgcacatgctcaag
ctgcaccacttggtcgacgacaagatgcacgcgcgttcgaccggtccgtactcgctggtg
acgcaacagccgttgggcggtaaggctcagttcggtggtcagcgcttcggtgaaatggaa
gtgtgggcactggaagcctatggcgcatcgtatgtgctgcaggaaatgctgaccgtgaag
tcggatgacgtgacgggtcgtacgaaggtgtacgagaacctcgtcaagggcgatcacgtg
atcgatgccggcatgccggaatcgttcaacgtgctggtcaaggaaatccgttcgctcggt
atcgatatcgacctggagcgcggttaa
DBGET
integrated database retrieval system
