Proteus appendicitidis: QQS39_17090
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Entry
QQS39_17090 CDS
T09947
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
papp
Proteus appendicitidis
Pathway
papp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
papp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QQS39_17090 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
papp03021
]
QQS39_17090 (rpoB)
03400 DNA repair and recombination proteins [BR:
papp03400
]
QQS39_17090 (rpoB)
Enzymes [BR:
papp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QQS39_17090 (rpoB)
Transcription machinery [BR:
papp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QQS39_17090 (rpoB)
DNA repair and recombination proteins [BR:
papp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QQS39_17090 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
SPG4
EF-hand_11
Motif
Other DBs
NCBI-ProteinID:
WIV88142
UniProt:
A0ABY8Y6V0
LinkDB
All DBs
Position
complement(3744151..3748179)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPDGQNGLEAAFRSVFPIQ
SYSGNAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRAMNYSTEEILGLFFEKTLFEISNNKLMMT
LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKEQVDRIEVPVEYIAGKVVARD
YIDEATGELICAANMEISLDVLARLSQAGHKTIETLFTNDLDHGAYISETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLSRDEVEGSGIL
SQEDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDALMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRVVENNAVT
DEIHYLSAIEEGNFIIAQANSVLDDDNHFVEELVTCRHKGESSLFSRDQVQYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRGDKPLVGTGMERAVAVDSGVTAVAKR
GGVVQYVDASRIVIKVNEEETYAGEAGIDIYSLTKYTRSNQNTCINQTPCVSLGEPVDRG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNYEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEESQLREVKKDL
TEELRIFEAGLFARIRGVLIAGGIEAEKLDKLPRERWLELGIADEEKQNQLEQLAEQYDE
LKAEFAKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGNPVDLVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQKAYDLGMAPRQKVDLDTFSDEEVLRLAENLKKGMPTATPVFDGAEEMEIKEMLK
LADLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgttccctatctcctttctatccaacttgactcgttccagaagtttatcgag
caagatcctgatggtcaaaacggtctggaagcagctttccgctccgtatttcctatccaa
agctacagtggtaacgctgaattacaatatgtcagctaccgcttaggcgagcctgttttt
gatgttaaagaatgtcagatccgcggtgtaacttactcagcacctttgcgtgtaaaactg
cgtctggtcatttatgaacgtgaagccccagaaggcaccgttaaagacatcaaagaacaa
gaagtctatatgggtgaaatcccattaatgaccgataatggtacctttgttatcaatggt
acagagcgtgttatcgtttcccagttacaccgtagccctggtgtgttctttgatagtgac
aaaggtaaaacacactcttcaggtaaggtactgtataacgcacgtattatcccttatcgt
ggctcatggttagactttgaattcgaccctaaagataacctttttgtccgtattgaccgt
cgccgtaaattacctgcgactatcattttacgcgcaatgaactacagcaccgaagaaatc
ttaggtttattcttcgaaaaaacattgtttgaaatcagcaacaacaagctgatgatgaca
ttagtgcctgaacgtctgcgtggtgaaactgcttcatttgatattgaagcaaacggcaaa
gtgtatgtcgaaaaaggccgtcgtattaccgctcgtcatattcgtcaattagaaaaagaa
caagttgaccgcattgaagtacctgttgaatacattgcaggtaaagtggttgctcgtgac
tatattgatgaagcgacaggtgaactgatttgtgctgctaacatggaaatctctttagat
gtgttagcccgcttaagtcaagctggtcataaaacgattgaaaccctgtttaccaatgac
ttagatcatggtgcttatatttcagaaactgttcgcgtcgatcctacaaacgatcgttta
agcgcattagttgaaatctatcgcatgatgcgtcctggtgaaccacctacacgcgaagca
gctgaaaacttatttgagaacttattcttctctgaagatcgttacgatctttctgctgtt
ggtcgtatgaagttcaaccgttcgttaagccgtgacgaagttgaaggttctggcatcctg
agccaagaagatatcattgaagtaatgaaaaaactgattgatatccgtaatggtaaaggt
gaagtggatgatatcgaccacttaggtaaccgtcgtattcgttctgttggcgaaatggct
gaaaaccaattccgtgttggtctggtgcgtgttgaacgtgcagttaaagaacgtctgtct
ttaggcgatcttgatgcattaatgccacaagatatgatcaacgcaaaaccgatttctgct
gctgtcaaagaattctttggttctagccagttatcacagtttatggatcagaataacccg
ctatcagaaattacgcacaaacgtcgtatttctgcattaggcccaggtggtttgacccgt
gaacgtgcaggcttcgaagttcgagacgtacacccaactcactacggtcgtgtgtgccca
atcgaaacacctgaaggtccaaacatcggtcttatcaactcattatctgtttacgcacag
actaacgagtacggtttcctagaaacgccttaccgtgttgttgaaaacaatgctgtaaca
gatgaaattcattatctgtctgcaatcgaagaaggtaacttcatcattgctcaggctaac
tccgtattagacgatgataatcacttcgttgaagaattagttacttgccgtcataaaggt
gagtcaagcttatttagtcgtgaccaagttcagtacatggacgtttcaacccaacaggtt
gtttctgtcggtgcttcactgatcccattccttgaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggctgttcctacacttcgtggtgataaaccactggta
ggtacaggtatggaacgtgcggtagcggttgactccggtgttactgcggttgctaaacgt
ggtggtgttgttcagtatgttgatgcttctcgtatcgttatcaaagttaacgaagaagag
acttacgctggcgaagcgggcatcgatatctacagcttgactaaatacactcgttctaac
cagaacacatgtattaaccaaactccttgcgtatctttaggtgaacctgttgatcgtggt
gacgtattagccgatggtccttcaacagaccttggtgagttagcattaggtcaaaacatg
cgcgtggcatttatgccatggaatggttataactacgaggactccatccttgtatctgaa
cgtgttgttcaagaagatcgtttcactactatccacattcaagaactcgcttgtgtttct
cgtgataccaagttagggcctgaagagatcaccgctgatatcccgaacgttggtgaagct
gcgttatctaaactggatgaatcaggtatcgtttatatcggtgctgaagtgaaaggcggt
gacattctagttggtaaagtaacacctaaaggtgaaactcaactgactccagaagagaaa
ctgctgcgtgctatcttcggtgaaaaagcgtctgatgttaaagattcttctctgcgtgtt
cctaatggtgtgtctggtactgttatcgacgtacaagtcttcacccgtgatggcgtagaa
aaagataaacgtgcattagaaatcgaagaatcacagttacgtgaagttaagaaagactta
actgaagaactgcgtatctttgaagctggtctattcgctcgtatccgtggtgttctgatt
gctggcggtattgaagctgagaaattagataaattacctcgtgaacgttggttagagctg
ggcattgcggatgaagagaagcaaaaccagttagaacaattagcagaacagtatgatgaa
ctgaaagctgagttcgcgaagaaactggaagctaaacgccgtaaaatcactcaaggcgat
gatttagcaccaggcgtgctgaaaatcgttaaggtttacctggctgttaaacgtcagatc
caacctggtgataagatggcgggtcgtcatggtaacaagggtgttatctctaagattaac
ccaattgaagacatgccatacgatgaaaacggtaatccagtagacctcgtactgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagatccttgaaactcacttgggtatggct
gctaaaggtatcggtgataagatcaacgcgatgctgaaacagcaacaagaagttgctaaa
ttacgtgaatttatccagaaagcttacgatctgggtatggcacctcgtcagaaagttgat
ctggacaccttcagcgatgaagaagtgttacgtctggctgaaaacctgaaaaaaggtatg
ccaaccgcaacaccagtgttcgatggtgcagaagaaatggaaattaaagagatgctgaaa
ttagctgatcttccaacttctggtcagattacacttttcgatggtcgtacaggtgagcaa
tttgagcgcccagtaaccgttggttacatgtacatgctgaaactgaaccacttagttgat
gacaagatgcacgcccgttctactggctcgtacagcttggttactcagcaacctcttggt
ggtaaagcacagtttggtggacagcgtttcggggagatggaagtgtgggcactggaagca
tacggtgcagcttatactcttcaagaaatgcttactgttaagtcagatgacgttaacggt
cgtaccaaaatgtacaaaaacatcgttgatggtaaccatcagatggaaccaggtatgcca
gagtcgttcaacgtattgttgaaagagatccgttcactgggtatcaacatcgaattggaa
gacgaataa
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