Pseudemcibacter aquimaris: KW060_03070
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Entry
KW060_03070 CDS
T08836
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
paqi
Pseudemcibacter aquimaris
Pathway
paqi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paqi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KW060_03070 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paqi03021
]
KW060_03070 (rpoB)
03400 DNA repair and recombination proteins [BR:
paqi03400
]
KW060_03070 (rpoB)
Enzymes [BR:
paqi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KW060_03070 (rpoB)
Transcription machinery [BR:
paqi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KW060_03070 (rpoB)
DNA repair and recombination proteins [BR:
paqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KW060_03070 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
WDU59246
LinkDB
All DBs
Position
641842..645942
Genome browser
AA seq
1366 aa
AA seq
DB search
MATSYSSRKKVRKNFGRIREVAEMPNLIKVQKSSYDQFLQTDIALDDRTNDGLQGVFKSV
FPIADFAETASLEFVSYELEKPKYDTDECQQRDITYAAPLRVTLRLIVFEVDEETEARSV
LDIKEQDVYMGDLPLMTDRGTFIVNGTERVIVSQMHRSPGVFFDHDGGKTQASGKFLFSA
RVIPYRGSWLDFEFDAKDIIHVRFDRRRKMPVTTLLYALGLSAEDILDYYYGRLTYSKVK
GGWSVPFDAERWRGSKPTFDLVNAKDGEVIAEAGKKITPRAVKKLEKAGVENLLLPDDDL
INRFAAEDMVNGKTGEIYIEAGEEITAEHLEVLSKAGYKKIDTLDIDHVRVGPFLRNTLM
ADKVQNRDMALSEIYRVMRPGEPPTRETAEALFEGLFFDAERYDLSSVGRVKMNMRLDLD
CPDDHRVLRKEDILEVLRTMIDLKDGKGVVDDIDHLGNRRVRSVGELMENQYRIGLLRME
RAIRERMSSIDIDTVMPHDLVNAKPAVAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSA
LGPGGLTRERAGFEVRDVHTTHYGRICPIETPEGPNIGLINSLATYAKVNKYGFIETPYR
KVEGGKITDEVVYLSAMEEEKYTIAQANTPLDDKGDFAHEVVDCRQAGDHVLKKHEDINL
MDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLLKAESPFVGTGMERVVARDS
GAAVVATRGGVIDQVDAIRIVIRVTDEIDHDSSAVDIYTLQKFQRSNQNTCINQRPIVKV
GDVVKAGDVIADGPSTDLGELALGRNVLVAFMPWHGYNFEDSILISERIVKDDVFTSIHI
EEFEVMARDTKLGPEDITRDIPNVGEEGLRNLDEAGIVYLGAEVHPGDILVGKITPKGES
PMTPEEKLLRAIFGEKAADVRDTSMRLPPGVAGTVVEVRVFNRHGIDKDERAIAIEREEI
ERLSKDREDEQTIIDRSIYVRLKPLLLGGKILSGPKEVKKGDKVTEELLGELSKGLWWQI
AVDDEKVMEQVDALHQQFEDARAQLLARFEEKIEKLQRGDELLPGVLKMVKVFVAVKRKL
QPGDKMAGRHGNKGVISRILPQEDMPYLEDGTPVDICLNPLGVPSRMNVGQILETHLGWA
SRGLGVQITEMLDAHDKAEVEKAEELRAKFKNVYDETQYDAEIAPLNDEDVIGMSDNLRN
GIPMATPVFDGAHEPDVVSMLEEAGLDGSGQVDLYDGLTGDKFDRKVTVGYIYMLKLHHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDV
NGRTKVYESIVRGDDSFDAGVPESFNVLVKEMKSLCLNVELTNHNQ
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttcttattccagtcgtaaaaaagttcgtaagaattttggacgtatccgtgaa
gtggcagaaatgcctaatcttattaaggttcaaaaaagctcttatgatcagtttctacaa
acagatattgcacttgatgatcgtacgaatgacggtttgcaaggtgtgttcaaaagcgta
ttccctattgcggattttgctgaaacggcatcactagagttcgtgtcatacgaactagag
aagccaaagtatgatactgatgagtgtcaacaacgtgatattacatatgcagcgccgcta
cgcgtgacgttgcgtcttattgtttttgaagttgatgaagaaacagaagcgcgttctgtt
ctagatattaaagagcaagacgtatacatgggcgatctgccgcttatgacagaccgtggt
acattcattgtaaacggtactgagcgtgtaatcgtatctcaaatgcaccgttcgccaggt
gtgttctttgatcatgatggtggtaaaacacaggcgtcaggtaaattcctgttctctgct
cgtgttatcccataccgtggttcatggcttgattttgaatttgacgcgaaagacattatc
catgttcgttttgaccgtcgtcgtaagatgcctgttactacgcttctttatgcacttggt
ttaagtgcggaagatattcttgattattattatggccgtctgacttacagcaaagtcaaa
ggtggctggagtgtaccgtttgatgctgaaagatggcgtggttcaaagccgacgtttgat
cttgttaatgcaaaagacggcgaagttattgccgaagcaggtaagaagatcacaccgcgc
gctgtgaagaagcttgaaaaagctggtgttgaaaaccttcttcttcctgatgatgatctg
attaaccgttttgctgctgaagatatggtcaacggtaaaactggtgagatttacatcgaa
gccggtgaagagattactgcagagcacctagaagtgctttcaaaagcaggttataagaaa
attgatacgcttgatatcgatcacgtgcgtgttggtccgttcctgcgtaatacattgatg
gctgataaagttcagaaccgcgatatggcgctatctgaaatttaccgcgttatgcgccct
ggtgagccaccaacacgtgaaacagcggaagcgctattcgaaggcctattcttcgatgcg
gaacgttatgacctgtcatctgttggtcgtgtgaaaatgaacatgcgtctagaccttgat
tgtccggatgatcaccgcgtgcttcgtaaagaagatattcttgaagttctaagaacaatg
atcgatcttaaagacggtaaaggtgttgtggatgatattgaccaccttggtaaccgccgt
gttcgttcagttggtgagttgatggaaaaccaataccgtattggtcttctgcgtatggaa
cgcgcgatccgtgaacgtatgagcagtattgatattgatacagtaatgccgcatgacctt
gtgaatgcgaagccagctgttgctgctgttcgtgaattcttcggttcatcgcagttaagt
cagtttatggaccaaacaaacccgctttcagaaattacgcataagcgtcgtttatctgcg
cttggaccaggtggtctaacgcgtgagcgtgctggtttcgaggtgcgtgacgtgcataca
actcactatggtcgtatttgtccgattgaaacacctgagggtccaaatattggtctgatc
aactcgctcgcgacatatgcgaaagtgaataagtacggtttcatcgagacaccttaccgt
aaagttgaaggtggcaaaattactgatgaggttgtttatctttcagcgatggaagaagag
aaatacacaatcgcgcaggcgaacacgccacttgatgataaaggtgacttcgcacatgaa
gttgttgactgtcgtcaagcaggtgatcatgtacttaagaaacatgaagatattaacctt
atggacgtttcaccgaagcaggttgtttctgttgctgcggcgcttattccgttccttgag
aacgatgacgcgaaccgcgcgcttatgggatcaaacatgcaacgtcaggccgttcctctt
ctaaaagcggaatcaccattcgttggtactggtatggaacgcgttgtagcgcgtgatagt
ggtgcagcggttgttgcaacacgtggcggtgtgattgaccaagttgatgcgatccgtatt
gtgatccgtgtaacggatgaaatcgatcatgatagctcagctgttgatatctatacgcta
caaaaattccaacgttcaaaccagaacacatgcattaaccaacgcccgattgttaaagtg
ggtgacgtggttaaggctggtgatgttattgctgacggtccatcaacggatcttggtgaa
ctggcacttggtcgtaatgtgcttgtggcctttatgccatggcatggttataactttgaa
gatagtatccttatttccgaacgtatcgtgaaggacgacgtattcacatcgatccatatc
gaagagttcgaagtaatggcacgtgatacgaagcttggcccagaagatatcacacgcgat
attccaaacgtgggtgaagaaggtcttcgtaaccttgacgaagctggtatcgtatatctt
ggcgctgaagttcatcctggtgatattcttgttggtaagattacaccaaaaggtgaaagc
ccaatgacaccagaagaaaaacttcttcgtgcgatctttggtgagaaggctgctgatgta
cgtgatacatcaatgcgtctaccgccaggtgttgccggtacagttgttgaggttcgtgtg
tttaaccgtcacggtattgataaagacgaacgtgcgatcgcgattgagcgtgaagaaatc
gaacgtctttcaaaagaccgtgaagatgagcaaacaatcatcgatcgcagtatctatgtt
cgcttgaagccgctactgcttggtggaaaaatcctaagtggtccaaaagaagtgaaaaaa
ggtgacaaagttactgaagagcttcttggcgaactttcaaaaggtctatggtggcaaatc
gctgttgatgatgaaaaagtcatggaacaggttgatgcgcttcatcaacaatttgaagat
gcacgtgcgcaacttcttgctcgctttgaagaaaaaattgaaaaacttcaacgtggtgat
gagcttcttccaggcgttcttaaaatggttaaggttttcgttgctgttaaacgtaaactt
cagcctggtgataagatggctggtcgtcatggtaacaaaggggttatttcccgcattctt
ccacaagaagatatgccgtaccttgaagacggaacgccagttgatatctgtttgaaccca
cttggtgttccatcacgtatgaacgtgggacagattcttgaaactcaccttggttgggcg
tcacgtggtctgggtgttcaaatcacagaaatgcttgatgcgcatgataaagccgaagtt
gaaaaggctgaagagctacgtgccaagtttaaaaacgtatatgacgaaacacagtatgat
gctgagatcgcacctctaaatgatgaagatgtgatcggtatgtcagacaacctacgtaac
ggtattccaatggcgacacctgtttttgatggtgcacatgagccagacgttgttagcatg
cttgaagaagcaggtcttgacggatcaggtcaggttgatctttatgatggtctgacaggt
gacaagtttgaccgtaaagtaaccgttggttacatttacatgcttaagcttcaccatctt
gttgatgataagatccatgctcgttccattggtccatactcacttgttacgcagcaacca
cttggcggtaaagcccagtttggtggtcagcgcttcggtgagatggaggtatgggcactt
caggcatatggtgctgcttatacacttcaggaaatgctaaccgttaaatcggatgatgtg
aatggccgtacgaaggtatacgaaagtatcgttcgtggcgatgacagcttcgatgcgggt
gttccggaatcatttaacgttcttgtgaaagagatgaaatctctgtgcttgaatgttgaa
ctaacaaatcacaaccaatag
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