Pseudemcibacter aquimaris: KW060_05730
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Entry
KW060_05730 CDS
T08836
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
paqi
Pseudemcibacter aquimaris
Pathway
paqi02024
Quorum sensing
paqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KW060_05730 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
KW060_05730 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqi03019
]
KW060_05730 (hfq)
03036 Chromosome and associated proteins [BR:
paqi03036
]
KW060_05730 (hfq)
Messenger RNA biogenesis [BR:
paqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
KW060_05730 (hfq)
Chromosome and associated proteins [BR:
paqi03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
KW060_05730 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
LSM
AcMNPV_AC11
Motif
Other DBs
NCBI-ProteinID:
WDU59754
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All DBs
Position
1178259..1178513
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AA seq
84 aa
AA seq
DB search
MSEKMHNLQDAFLNHVRKNKTPITVFLVNGVKLQGIITWFDNFCILLRRDSNVQLVYKHA
ISTIMPGGPINLFDGDEEGTLDGE
NT seq
255 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaaaatgcacaacttacaagatgcctttctaaaccatgtccgtaaaaacaaa
acgccaattaccgttttccttgttaatggggttaagcttcagggaattattacgtggttt
gacaatttctgtattttgcttcgccgtgattcaaatgttcaattggtttataagcatgcg
atttcaacaatcatgcctgggggtccaattaatctatttgacggtgatgaagaggggaca
cttgatggggagtaa
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