KEGG   Pseudemcibacter aquimaris: KW060_05730
Entry
KW060_05730       CDS       T08836                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
paqi  Pseudemcibacter aquimaris
Pathway
paqi02024  Quorum sensing
paqi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:paqi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KW060_05730 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    KW060_05730 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:paqi03019]
    KW060_05730 (hfq)
   03036 Chromosome and associated proteins [BR:paqi03036]
    KW060_05730 (hfq)
Messenger RNA biogenesis [BR:paqi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     KW060_05730 (hfq)
Chromosome and associated proteins [BR:paqi03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    KW060_05730 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM AcMNPV_AC11
Other DBs
NCBI-ProteinID: WDU59754
LinkDB
Position
1178259..1178513
AA seq 84 aa
MSEKMHNLQDAFLNHVRKNKTPITVFLVNGVKLQGIITWFDNFCILLRRDSNVQLVYKHA
ISTIMPGGPINLFDGDEEGTLDGE
NT seq 255 nt   +upstreamnt  +downstreamnt
atgtcagaaaaaatgcacaacttacaagatgcctttctaaaccatgtccgtaaaaacaaa
acgccaattaccgttttccttgttaatggggttaagcttcagggaattattacgtggttt
gacaatttctgtattttgcttcgccgtgattcaaatgttcaattggtttataagcatgcg
atttcaacaatcatgcctgggggtccaattaatctatttgacggtgatgaagaggggaca
cttgatggggagtaa

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