Polynucleobacter arcticus: DN92_00235
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Entry
DN92_00235 CDS
T09901
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pard
Polynucleobacter arcticus
Pathway
pard03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pard00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DN92_00235 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pard03021
]
DN92_00235 (rpoB)
03400 DNA repair and recombination proteins [BR:
pard03400
]
DN92_00235 (rpoB)
Enzymes [BR:
pard01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DN92_00235 (rpoB)
Transcription machinery [BR:
pard03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DN92_00235 (rpoB)
DNA repair and recombination proteins [BR:
pard03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DN92_00235 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
QKM61445
UniProt:
A0A6M9PRM3
LinkDB
All DBs
Position
38191..42291
Genome browser
AA seq
1366 aa
AA seq
DB search
MNYSFTERKRVRKSFAKRVNNHQVPYLIATQLESYAKFLQAEKPAMSRLTEGLQAAFTSA
FPIVSNNGYARMEYVSYQLSQPPFDVKECQQRGYTYHSALRAKVRLIIYDREAPTKVKEV
KESEVYMGEIPLMTDNGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARII
PYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNNEQILANFFNFDHFALTANGA
AMEFVPERLRGQLANFDVLDKNGVVVIQKDKRINAKHIRELEAAKTKNIVVPDDYLVGRV
VARNIIDPDSGEILAYANDEITEELLATLRDAGIKQLETIYTNDLDSGAYISQTLRTDET
ADQMAARIAIYRMMRPGEPPTEDAVEALFQRLFYNEDSYDLSRVGRMKVNSRLGRSEMEG
KMVLSDEDILDTIKSLVDLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRVERAVK
ERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRISALGPG
GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARLNEHGFLETPYRKVAN
SKVSDEVMYLSAIEEAKYIIAQANATIDKSGKLADELVSARQAGETMMVSPERIDFIDVA
PSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGLERIVAVDSGTVI
LASRGGIVDYVDANRVVIRVNDDETAAGEVGVDIYNLIKYTRSNQNTNINQRPIVQAGDR
VVRGDVVADGASTDLGELALGQNMTVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEEL
SVVARDTKLGSEEITRDISNLAESQLSRLDESGIVYIGAEVEAGDVLVGKVTPKGETTLT
PEEKLLRAIFGEKASDVKDTSLRVPSGMIGTVIDVQVFTREGIERDARAQAIIQEELQRY
RLDLNDQLRIVEGDAFMRLEKLLIGKVANGGPKKLAKGTKIDKEYLADLDKYHWFDVRPA
DDEVASQVEAIKSSIEAKRKQFDEAFEEKRTKLTQGDDLQPGVTKMVKVYLAVKRRLQPG
DKMAGRHGNKGVVSKIAPAEDMPFMADGRPVDIVLNPLGVPSRMNVGQILETHLGWAAQG
IGKRIDEMVRQQVKQAELRKFMKQLYNETGRIEDIDNFTDEQITVLAENLRQGLPFATPV
FDGATEAEISRMLELAYPEEVATSLKMTPSRQQMILCDGRTGDQFERPVTVGVMHVLKLH
HLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSD
DVAGRTKVYENIVKGEHTIDAGMPESFNVLVKEIRSLGIDIDMERN
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgaactacagcttcaccgaacgcaagcgagtccgtaaaagctttgctaagcgagtaaat
aatcatcaggttccatacctgatcgcaacgcagctggaatcctacgctaaatttttacag
gctgaaaagccagccatgtcccgtcttactgagggacttcaagctgcctttacatcagca
ttcccaattgtgtccaacaatggttacgcacgtatggaatacgtgtcataccagttgtca
cagccaccgtttgacgttaaagaatgtcaacaacgtggttacacataccactcagcctta
cgtgcaaaagttcgcttgattatttatgatcgcgaagcacctactaaggtgaaagaggta
aaagagagcgaagtctacatgggtgaaattccgctcatgacagataacggctcttttgtt
atcaacggtactgagcgcgtcatcgtttctcagttgcaccgttccccaggcgtgttcttc
gagcacgataagggcaagacacatagctcaggtaagttgctgttctcagcgcgtatcatc
ccttaccgtggttcatggctcgatttcgagtttgatccaaaagatattctgtatttccgc
gttgaccgtcgtcgtaagatgcccgtcaccattctgctcaaagcaattggtttaaacaac
gaacagattcttgcaaacttctttaactttgaccatttcgcattaactgctaatggcgca
gcaatggaatttgttccagagcgcttgcgtggtcagttggctaactttgacgtgctcgac
aagaatggcgttgttgtcattcaaaaagacaagcgtatcaatgcaaaacatattcgtgaa
ctcgaagctgcaaagactaaaaacatcgttgttccagatgactacttagttggtcgtgta
gttgcacgcaacattattgatcccgattctggtgaaatcttggcatacgctaatgatgaa
atcactgaagagttgttggctacattgcgtgatgcaggcatcaagcaattagaaactatc
tacaccaatgatttagattctggcgcatacatttcacagacattacgcactgatgaaact
gcggatcaaatggctgctcgtattgccatttatcgcatgatgcgtcctggcgagcctcca
acagaagatgctgttgaggctttgttccagcgcttgttctacaacgaagatagctacgat
ctatcacgcgttggtcgtatgaaagtaaacagccgtctcggtcgttcagagatggaaggc
aaaatggttttgtcggatgaagatatcctcgacaccattaagtcactcgttgacttgcgt
aacggcaaaggcgaagttgatgacatcgaccacttaggtaatcgtcgtgtacgttgcgtt
ggtgagttggcggaaaatcaattccgcgcaggtttgtcacgtgttgagcgtgcggttaaa
gaacgtctcggccaagccgaaacagaaaacctcatgccgcatgacttgattaacagcaag
ccaatctcttcggcgattcgtgagttcttcggttcttcacagttgtctcagtttatggat
caaactaatcccttgtcagagatcacgcacaagcgtcgtatttctgcattgggacctggt
ggtttgacacgcgagcgcgcaggtttcgaagtgcgcgacgtacatccaacccactatggt
cgcgtttgcccaattgaaactccagaaggaccaaacattggtttgatcaactcactcgcg
ttatttgcgcgtttgaatgagcatggtttcttggaaacgccatatcgtaaagtggcaaat
agcaaagtgagcgatgaagtaatgtatctctccgctattgaagaggcgaagtacatcatt
gctcaggctaatgcaacaatcgacaagagcggtaagttagccgatgaattggtttcagcg
cgtcaagctggcgagaccatgatggtgagtccagagcgaattgattttattgacgtagct
cctagccagatcgtttctgcagctgcttcactcgtcccattcttagagcacgatgatgca
aaccgtgcgttgatgggtgcgaacatgcagcgtcaagcggttccttgcttgcgtccagat
aagccattggttggtacaggcttagagcgtattgttgcagttgactcgggcactgttatt
ttggcgtcccgtggcggtattgttgattatgtcgatgcaaatcgtgtggtgattcgtgta
aacgatgatgaaactgctgctggtgaagtgggtgtggatatttataacctcatcaagtac
acccgttcaaatcaaaacaccaacatcaatcaacgtccgatcgtacaggctggtgatcgt
gtagtgcgtggcgacgtagttgctgacggcgcatctactgatttgggcgaattggctttg
ggtcaaaacatgaccgtggcatttatgccatggaacggttacaacttcgaagattcgatc
ttgatctctgaaaaggttgttgctgatgaccgttacacctctattcatattgaggagttg
tcggttgttgctcgtgacaccaagttgggttcagaagaaattacacgcgatatctctaac
ctggctgagtcacaactttcccgtttagacgaaagcggtattgtttatatcggtgctgaa
gttgaagctggtgacgtattggttggtaaggtcacgccaaagggcgagactactctcact
ccagaagagaagttactacgtgcgatcttcggtgaaaaagcatctgatgttaaagatact
tctttgcgcgttccatctggaatgattggcactgttattgacgttcaagtcttcacccgt
gaaggtattgagcgcgatgcccgtgcacaggccattattcaagaagaattacaacgctat
cgtttggacttaaatgaccagttgcgtattgttgagggcgatgccttcatgcgtttagaa
aagctgttgattggcaaagttgccaatggcggccctaagaaattagctaaaggcaccaag
atcgacaaggaataccttgctgacttagacaaatatcattggtttgatgttcgtccagca
gatgatgaagttgcctcacaagttgaagcaattaagtcttctattgaagcgaagcgtaag
cagtttgatgaggcttttgaagagaagcgtactaagcttacccagggcgatgatttgcag
cctggcgtaaccaagatggtcaaggtgtacttggctgttaagcgtcgcttacaacctggt
gacaagatggccggtcgacacggtaacaagggtgtggtttctaaaatcgccccagcagaa
gacatgccatttatggctgacggacgccctgttgacatcgtcttgaaccccttaggcgtt
ccttcccgtatgaacgttggtcagatcttggaaactcacttaggttgggcagctcaaggt
attggtaagcgtattgatgagatggttcgtcaacaagttaagcaagctgaactccgcaag
ttcatgaagcagctttacaacgaaaccggtcgtatcgaagacatcgacaactttactgat
gagcaaatcacagtcttagctgagaatttacgccaaggcttgccattcgctaccccagta
tttgacggtgctacggaagcagaaatcagccgcatgctcgagttggcatatccagaagag
gtagctacttctttaaagatgacgccatcacgtcagcaaatgattctgtgtgacggccgt
accggcgatcagtttgagcgtccagtcactgttggcgtaatgcacgtcttgaaactccac
catttggttgatgacaagatgcatgcacgttcaaccggaccttactctttagtaacgcaa
cagccactaggcggtaaggctcagtttggtggtcagcgctttggtgaaatggaagtttgg
gccctcgaagcatacggtgcttcatatgtcttgcaggaaatgctgacagtgaagtccgat
gacgtcgcaggccgtaccaaggtttacgaaaacatcgtcaagggcgagcacacaattgat
gctggcatgcccgaatccttcaacgtactggtaaaagaaatccgttcgttgggtattgac
attgacatggagcgcaactga
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integrated database retrieval system
