Pectobacterium aroidearum: I2D83_20830
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Entry
I2D83_20830 CDS
T07244
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pari
Pectobacterium aroidearum
Pathway
pari03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pari00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I2D83_20830 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pari03021
]
I2D83_20830 (rpoB)
03400 DNA repair and recombination proteins [BR:
pari03400
]
I2D83_20830 (rpoB)
Enzymes [BR:
pari01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I2D83_20830 (rpoB)
Transcription machinery [BR:
pari03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I2D83_20830 (rpoB)
DNA repair and recombination proteins [BR:
pari03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I2D83_20830 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
QPI42823
LinkDB
All DBs
Position
complement(4674098..4678126)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALGYSTEQILDLFFDKIVYEINGNKLQMD
LVPERLRGETASFDIEANGKVYIEKGRRITARHIRQLEKDGIERIEVPVEYIAGKVLSKD
YIDESTGELIGAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYMSETVRVDPSNDRL
SALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDNVVT
DEIHYLSAIEEGNFVIAQANTNLDEEGRFIDELVTCRNKGESSLFSRDQVEYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIRVNDDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVSGGVEADKLDKLPRERWLELGLTDEDKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKQHEEVTK
LREFIQRAYDLGDDVRQKVDLSTFSDEEVMRLAENLKKGMPIATPVFDGAKEKEIKELLQ
MGGIPTSGQITLYDGRTGEKFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgcattcgtaaggattttggtaaacgtccacag
gttttggacataccttatctcctttctatccaacttgactcgttccagaagtttatcgag
caagacccggaaggtcagtacggtttggaagctgcattccgttctgttttccccataaaa
agctatagcggtaattcagagctgcaatacgttagctatcgcttgggcgagccagtattt
gacgttaaagaatgtcagatccgtggtgtgacgttctctgcgccgctgcgcgttaaactg
cgcctggtgatctacgagcgcgaagcgcctgaaggcaccgttaaagacatcaaagaacaa
gaagtttacatgggcgaaattccgctcatgaccgacaacggtaccttcgtgatcaacggt
actgagcgcgtaatcgtgtctcagttgcaccgtagtcctggtgtgttcttcgatagcgac
aaaggtaaaacccactcttcaggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcctggttggatttcgagtttgatccgaaggataacctgtttgttcgtatcgaccgt
cgccgcaaactgcctgcgaccattatcctgcgtgcgctgggttactccaccgagcagatt
ctcgatcttttcttcgataaaattgtctatgaaatcaatggcaataaattgcagatggat
ctggttcctgagcgcttgcgtggtgaaaccgcctcgtttgatatcgaagcgaacggtaaa
gtttatatcgaaaaaggccgccgtatcactgcacgccatatccgtcagttagagaaagac
ggtattgaacgcattgaagtgcctgttgaatatatcgctggcaaagttctgtccaaagac
tatatcgacgagagcaccggtgaactgatcggcgcagctaacatggagctgtcgctggat
ctgctggctaaactgagccagtctggccacaaacgtattgagactctgttcaccaacgat
cttgatcatggtgcatacatgtctgaaaccgtgcgtgtcgatccatcaaacgatcgcctg
agcgcgctggttgaaatctatcgcatgatgcgtcctggtgagccgccaacgcgtgaagca
gcagaaacgctgttcgagaacctgttcttctctgaagaccgctacgatctgtctgcggtt
ggtcgtatgaagttcaaccgttctctgttacgtgatgagatcgaaggttctggtatcctg
agcaaagatgacatcatcgaagtgatgaagaagctcattgatatccgtaacggtaaaggc
gaagtggacgatatcgaccaccttggcaaccgtcgtatccgttccgtcggcgaaatggca
gaaaaccaattccgcgttggtctggtgcgtgtagaacgtgctgtaaaagagcgtctgtct
ctgggcgatctcgatacgctgatgccacaggacatgatcaacgccaagccgatttcggct
gccgtgaaagagttcttcggttcgagccagctgtcacagtttatggaccagaacaacccg
ctgtccgagattacgcacaaacgtcgtatctctgcattgggcccaggtggtctgacgcgt
gaacgcgccggctttgaagtccgtgacgtacacccaactcactacggccgtgtttgtcct
atcgaaacgccggaaggtccgaacatcggtctgatcaactccctgtccgtttatgcgcaa
acgaacgagtatggtttccttgaaaccccatatcgtcgtgtgcgtgacaacgtggtgacg
gatgagatccattatctgtctgcgattgaagaaggtaacttcgttatcgcacaggcgaac
accaatttggacgaagaaggccgcttcatcgacgaactggttacctgccgtaacaaaggc
gagtccagcttgttcagccgcgatcaggttgaatacatggacgtttccacacagcaggtg
gtttccgtcggtgcatccctgattccgttcctggaacacgatgacgccaaccgtgccctg
atgggtgcgaacatgcaacgtcaggccgttccgaccctgcgcgctgataagccgctggtt
ggtaccggtatggaacgtgctgttgcggttgactccggtgtaactgccgtagccaaacgt
ggtggtacagtacagtacgtggatgcatcccgtattgtaattcgcgttaatgacgatgaa
atgtatccgggcgaagccgggatcgacatctataacctgaccaaatatacccgttctaac
cagaacacctgcatcagccagatgccgtgtgtttctctgggtgagccggtagaacgtggt
gacgttctggcagatggcccgtccaccgatctgggtgaactggcgctgggccagaacatg
cgcgtggcattcatgccatggaatggttacaacttcgaagactccatcctcgtttccgag
cgtgtggttcaggaagatcgctttacgaccatccatattcaggaacttgcctgtgtgtct
cgtgacaccaagttagggcctgaagaaattactgcggacatcccgaacgtgggtgaagca
gcactttccaaactggatgagtccggcattgtttacatcggtgcggaagtgaccggtgga
gacattctggttggtaaagttacgccgaaaggtgaaacccagctgacgccagaagaaaag
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgta
ccaaacggtgtttccggtacgattatcgacgtacaggtctttacccgcgatggcgtggaa
aaagacaagcgtgcgttggaaatcgaagaaatgcagctgaagcaggcgaagaaagacctg
actgaagaattgcagattctggaagcgggcctgtttgcacgtatccacgctgtgctggtt
tccggcggcgtagaagccgacaaactggacaaactgccgcgtgagcgctggttggaactg
ggtctgactgatgaagataaacagaatcagttggaacagttggcagaacagtatgatgag
ctgaagcatgagtttgagaaaaaactcgaagctaagcgccgtaaaatcactcagggcgat
gatctggcaccgggcgtgctgaaaatcgttaaggtttatctggctgttaaacgtcagatc
caaccgggtgacaaaatggcaggtcgtcacgggaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgagaacggtacgccggtcgatatcgtactgaacccg
ctgggcgtaccttcacgtatgaacattggtcagattctggaaacccatctgggtatggct
gcgaaaggtatcggcgagaaaatcaacgccatgctcaagcagcacgaagaagtgactaaa
ctgcgtgagttcatccagagagcctacgatctgggcgacgatgtgcgtcagaaagtcgac
ctgagcactttctcagacgaagaagttatgcgtctggctgaaaacctgaagaaaggtatg
ccaattgcaacgccggtattcgacggtgcaaaagagaaagaaatcaaggaactgttgcag
atgggcggtatccctacctccggtcagattaccctgtacgatggacgtaccggtgagaaa
tttgagcgtcaggttacagtgggctacatgtacatgctgaaactgaaccacttggttgac
gataagatgcatgctcgttccaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggctcaattcggtggtcaacgcttcggtgagatggaagtgtgggcgctggaagct
tatggtgcagcttataccctgcaagaaatgttgaccgttaagtctgatgacgtgaacggc
cgtaccaagatgtataagaacatcgtggatggcaatcatcagatggaaccaggcatgccg
gaatccttcaacgtattgttgaaagaaatccgctcgctgggtatcaacatcgagctggaa
gaagagtaa
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