KEGG   Phalacrocorax aristotelis (European shag): 142056221
Entry
142056221         CDS       T11493                                 
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain
  KO
K24356  collagen type XXV alpha
Organism
parx  Phalacrocorax aristotelis (European shag)
Brite
KEGG Orthology (KO) [BR:parx00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:parx00536]
    142056221 (COL25A1)
Glycosaminoglycan binding proteins [BR:parx00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   142056221 (COL25A1)
SSDB
Other DBs
NCBI-GeneID: 142056221
NCBI-ProteinID: XP_074946779
LinkDB
Position
4:join(25865334..25865693,25866350..25866419,26034219..26034263,26036376..26036383,26066888..26066905,26086589..26086615,26086777..26086803,26097787..26097846,26099754..26099861,26103726..26103761,26115149..26115175,26117898..26117942,26128458..26128511,26130060..26130086,26132428..26132472,26139193..26139225,26139390..26139425,26143384..26143428,26156114..26156176,26156863..26156931,26159916..26159960,26160503..26160580,26163115..26163138,26164404..26164448,26166098..26166142,26166455..26166535,26167283..26167345,26169078..26169128,26169370..26169396,26171470..26171550,26173574..26173609,26174481..26174534,26179704..26179757,26180967..26180993,26181730..26181783,26188703..26188867)
AA seq 710 aa
MGGGGKEIKAAAAEGCKSMLGKSRGAAGRDGSGKPGCGGERCPRRAGPWGSALAALLSAL
AAASSVYLGVRTSDLQARVAAIEGARGGFSAAAPLPPLPAYSLEQLNAMMQEKVERLLAQ
KSYEHLAKIRVAREVPPECNCPPGPPGKRGKRGRRGETGPPGQPGPQGPPGPKGEKGDQG
DQGPRGLPGFPTVAALHSNQILTVKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGI
PGEPGKPGEQGLTGPQGPPGQKGSVGVPGAPGRDGQVGEPGLPGVAGEKGEAGLKGDPGE
RGEKGDAGENGLKGDTGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEP
GFIGPQGEPGLPGLPGTKGDRGEAGPVGKGERGEPGVPGPKGDTGDRGDTGYAGPRGPPG
QKGDQGATEIIDYNGNIHEALQRIATLTVTGPPGPPGPQGLQGPKGEPGSPGTPGVDGEQ
GPKGSKGDTGDPGMPGEKGGIGLPGLPGANGMKGEKGDVGLPGAQGPSMIGPPGPPGPHG
PPGPMGPHGLPGPKGEPGLNGLKGLKGEPGQKGDRGPLGLPGASGLDGKPGPRGVDGPVG
PHGPAGPKGDRGEKGTVGDPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDIGEKGEKGFRG
IKGEKGEPGQPGLDGLDAPCQLVQYFSFLPTLHVVPLFVVSHSQCKVMFF
NT seq 2133 nt   +upstreamnt  +downstreamnt
atggggggcggaggaaaggaaatcaaagcggccgcagctgaagggtgcaaaagcatgctg
gggaagagccgcggagccgcaggacgggatggcagcgggaagcccggctgcggcggggag
cgctgcccgcggcgggccgggccgtggggctcggcgctggccgccctcctctcggcgctg
gcggcggcctcctccgtctacctgggggtgcggaccagcgacctccaggccagggtcgcg
gccatcgagggcgcccgagggggcttctctgccgccgccccgctcccgccgctgcccgcc
tattccctggagcagctgaacgcgatgatgcaggagaaagtggagagacttctcgcccag
aaatcctacgagcacttggcaaaaatacgagtagcgagagaagtgccgccagagtgcaac
tgcccaccaggtcctccagggaaaagaggtaagcggggcagaagaggagagactggacct
cctggtcagcctggtccgcaaggccctcctggtccaaaaggcgagaagggagatcaaggt
gatcagggccctcggggtctgccaggcttccccacagttgctgctctgcacagtaatcag
atcctcaccgtcaagggggaccaaggacaagctggaccccctgggcctccagggccacca
ggacccagaggtcccccaggagatactggcaaagatggtcctcgcgggatgcctggcata
ccgggtgagccaggaaaaccaggagaacaaggattgacaggacctcaggggcctccagga
caaaagggttctgttggagtgcctggtgctccagggagagacggacaagtgggtgaacct
ggtttgcctggagtcgcgggagagaagggagaagcaggacttaagggtgaccctggagaa
agaggagaaaagggtgatgctggagaaaatggactaaagggtgacacaggagaaaagggt
gaccctggttcttctgctgcaggaattaagggtgaacccggtgaatctggacggcctgga
caaaagggtgaaccaggtcttcctgggcttcctggactccctgggataaagggtgaacca
ggtttcattggtccacaaggagaacctgggttgccaggactaccaggaacaaagggtgac
agaggagaggcaggccctgttgggaagggtgagcgaggtgaacctggagttcctggacca
aagggtgatacaggtgacagaggtgacacaggatatgcaggtccacggggaccacctgga
cagaagggtgatcaaggcgcaacagagataattgattataatggcaatatccatgaagct
ctgcagaggattgccaccctgactgtcacggggccaccaggaccaccaggaccccaaggc
ctgcaagggccgaagggtgaaccaggatccccaggaactccaggcgttgatggggagcag
ggtcctaaaggctcaaaaggagatacaggtgatcctggaatgcctggagaaaagggagga
attggactgcctggcctgccaggagccaatggtatgaaaggcgaaaaaggagatgttggt
ttgcctggtgcccaaggtccttcaatgataggaccacctggaccaccagggccacatggt
cctccaggccctatgggacctcatggactccctggtccaaagggtgaaccagggttaaat
ggtcttaaaggattgaagggtgaaccaggtcaaaagggtgacagagggccccttggtctt
ccaggagcatctggcttagacggaaagccaggaccccggggtgtagatggcccagttggt
ccccatggccctgcaggtcccaaaggagacagaggtgaaaagggaactgtaggcgaccct
ggacccagaggaccatacggcttgcctggcaaagatggcgagcctggccttgatggtttc
cctggtcctcgaggagaaaagggtgatataggagaaaagggagaaaagggattccgtgga
attaagggggaaaaaggggagccaggccagcctggcctggatgggctggatgccccttgc
caattggtacagtatttctctttcctaccaaccctgcatgtggttcctttgtttgtggtc
agccattctcaatgtaaagtaatgtttttctga

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