Pseudomonas atacamensis: JWU58_03615
Help
Entry
JWU58_03615 CDS
T07336
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pata
Pseudomonas atacamensis
Pathway
pata03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pata00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JWU58_03615 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pata03021
]
JWU58_03615 (rpoB)
03400 DNA repair and recombination proteins [BR:
pata03400
]
JWU58_03615 (rpoB)
Enzymes [BR:
pata01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JWU58_03615 (rpoB)
Transcription machinery [BR:
pata03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JWU58_03615 (rpoB)
DNA repair and recombination proteins [BR:
pata03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JWU58_03615 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QSL88391
LinkDB
All DBs
Position
786354..790427
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHLSGET
LSLELVPSRLRGEVAVLDIQDEKGKVIVEQGRRITARHINQIEKAGIKTLDVPLDYVLGR
TTAKAIVHPATGEILAECNTELNTEVLAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVTDEIVFLSAIEEADHVIAQASATMNEQKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMVEEQRKVAELRTFLDEIYNQIGGRNEDLDSFSDQEILDLANNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccttacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtattgcgcggtgtgactttcgccgtacctttg
cgggtaaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gtaatcaacggtaccgagcgtgttatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgcggcaagacgcacagctccggcaaactgctgtactcggctcgcatc
attccttaccgcggttcgtggctggacttcgaattcgacccgaaagactgcgtcttcgtg
cgtatcgaccgtcgtcgcaaactgccggcttcggtactgctgcgcgcactcggttacacc
accgaagaagtgctggacgcgttctacaccaccaacgtattccacctgagcggcgaaacc
ctcagcctggaactggtgccatcgcgcctgcgtggtgaagttgcggttctggacatccag
gacgagaagggcaaggtcatcgttgagcaaggccgccgtattaccgcgcgccacatcaac
cagatcgaaaaagccggtatcaagacgctggacgtgccactcgactacgtccttggccgc
accaccgccaaggctatcgtgcacccggctaccggagaaatcctggccgaatgcaacacc
gagctgaacactgaagtcctggcaaaaatcgccaaggctcaggtcgttcgcatcgagacc
ctgtacaccaacgacatcgactgcggtccgttcgtctccgacacgctgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtccaggcgagccg
ccaaccaaagacgctgccgaaaccctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgtgcaaggaagacatcgtcgcggtcctgaagactctggtcgacatc
cgcaacggtaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgaaatggccgagaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggcagaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctgtcgcagttcatg
gaccagaacaacccgctgtccgagatcacccacaagcgtcgtgtctctgcactcggccct
ggcggtctgactcgtgagcgcgcaggcttcgaagtccgtgacgtacacccgactcactac
ggtcgtgtctgcccgattgaaacgccggaaggtccgaacatcggcctgatcaactccctg
gctgcgtacgctcgcaccaaccagtacggcttcctggaaagcccgtaccgcgtggtgaaa
gagggtgtagtcaccgacgagatcgtgttcctgtccgctattgaagaagccgatcacgtg
atcgcgcaggcttcggcgaccatgaacgagcagaaagtcctgatcgacgaactggttgcc
gtacgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgtt
tcgccgaagcaggttgtgtcggttgcagcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggctgtaccgactctgcgcgct
gacaagccgctggtaggtaccggcatggagcgtaacgtagcccgtgactccggcgtttgc
gtcgtggctcgtcgtggtggcgtgatcgattccgtcgatgccagccgtatcgtggttcgt
gttgccgatgacgaagttgaaaccggtgaagccggtgtcgacatctacaacctgaccaag
tacacccgctcgaaccagaacacctgcatcaaccagcgtccgctggtgcgtaaaggtgat
cgcgttcagcgtagcgacatcatggccgacggcccgtccaccgacatgggtgagctggcg
ctgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaggaagaccgtttcaccacgatccacattcaggaa
ctgacctgtgtggcccgtgacaccaagcttggcccagaggaaatcactgcggacatcccg
aacgtgggtgaagctgcactgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagtaggcgcaggcgacatcctggttggcaaggtcactcccaaaggcgagacccaactg
actccggaagaaaaactgctgcgtgcaatcttcggtgaaaaagccagcgacgttaaagac
acatccctgcgcgtgccaaccggcaccaaaggtactgtcatcgacgtacaggtcttcacc
cgtgacggcgttgagcgtgatgctcgtgcactgtcgatcgagaagtcccagctggacgag
atccgcaaggatctgaacgaagagttccgcatcgttgaaggcgcgactttcgagcgtctg
cgttccgcactggtaggccacaaggccgaaggcggcgccggcctgaagaaggggcaggac
atcaccgacgaagtactcgacggtcttgagcacggccagtggttcaaactgcgcatggct
gaagatgcgctgaacgagcagctcgagaaggctcaggcctacatcgttgatcgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgccgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtggtcctcaacccgctgggcgta
ccttcgcgtatgaacgttggtcagatcctcgaaacccacctgggcctcgcggccaaaggt
ctgggcgagaagatcaaccggatggtcgaagagcagcgtaaagtcgctgaactgcgcacc
ttcctggacgagatctacaaccagatcggcggtcgtaacgaagatctggacagcttctcc
gatcaggaaatcctcgatctggcgaacaacctgcgtggcggcgttccaatggccactcca
gtgttcgacggcgccaaggaaagcgaaatcaaggccatgctgaaactggcagacctgccg
gaaagcggccagatgcagctgaccgacggccgtaccggcaacaagttcgagcgtccagtt
accgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgcg
cgttctaccggttcttacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcttac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccgtaccaagatgtac
aagaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaggaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
DBGET
integrated database retrieval system
