KEGG   PATHWAY: hiu03430
Entry
hiu03430                    Pathway                                
Name
Mismatch repair - Haemophilus influenzae 10810 (serotype b)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
hiu03430  Mismatch repair
hiu03430

Other DBs
GO: 0006298
Organism
Haemophilus influenzae 10810 (serotype b) [GN:hiu]
Gene
HIB_08370  methyl-directed mismatch repair protein [KO:K03555]
HIB_00600  methyl-directed mismatch repair protein [KO:K03572]
HIB_05140  methyl-directed mismatch repair protein [KO:K03573]
HIB_13430  DNA-dependent ATPase I and helicase II [KO:K03657] [EC:5.6.2.4]
HIB_15470  exonuclease I [KO:K01141] [EC:3.1.11.1]
HIB_05080  exonuclease VII, large subunit [KO:K03601] [EC:3.1.11.6]
HIB_16440  exonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
HIB_13720  ssDNA exonuclease, 5'--> 3'-specific [KO:K07462] [EC:3.1.-.-]
HIB_17500  Single-strand binding protein [KO:K03111]
HIB_03090  Single-stranded DNA-binding protein [KO:K03111]
HIB_00870  Single-strand binding protein [KO:K03111]
HIB_08730  DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
HIB_11320  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
HIB_13870  DNA polymerase III/DNA elongation factor III, tau and gamma subunits [KO:K02343] [EC:2.7.7.7]
HIB_10550  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
HIB_05850  DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
HIB_01900  DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
HIB_15680  DNA polymerase III, chi subunit [KO:K02339] [EC:2.7.7.7]
HIB_00110  DNA polymerase III, psi subunit [KO:K02344] [EC:2.7.7.7]
HIB_12580  DNA ligase, NAD(+)-dependent [KO:K01972] [EC:6.5.1.2]
HIB_02610  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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