KEGG   PATHWAY: osa00564
Entry
osa00564                    Pathway                                
Name
Glycerophospholipid metabolism - Oryza sativa japonica (Japanese rice) (RefSeq)
Class
Metabolism; Lipid metabolism
Pathway map
osa00564  Glycerophospholipid metabolism
osa00564

Module
osa_M00092  Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE [PATH:osa00564]
Other DBs
GO: 0006650
Organism
Oryza sativa japonica (Japanese rice) (RefSeq) [GN:osa]
Gene
4327964  probable glycerol-3-phosphate dehydrogenase [NAD(+)] 2, cytosolic [KO:K00006] [EC:1.1.1.8]
4342770  glycerol-3-phosphate dehydrogenase [NAD(+)], chloroplastic [KO:K00006] [EC:1.1.1.8]
4326512  probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [KO:K00006] [EC:1.1.1.8]
4339200  probable glycerol-3-phosphate dehydrogenase [NAD(+)] 3, cytosolic [KO:K00006] [EC:1.1.1.8]
4323847  glycerol-3-phosphate dehydrogenase [NAD(+)] isoform X1 [KO:K00006] [EC:1.1.1.8]
4335210  glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [KO:K00111] [EC:1.1.5.3]
4343455  glycerol-3-phosphate acyltransferase 3 [KO:K13506] [EC:2.3.1.15]
4349502  glycerol-3-phosphate acyltransferase, chloroplastic [KO:K00630] [EC:2.3.1.15]
4326982  probable glycerol-3-phosphate acyltransferase 3 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
4327112  probable glycerol-3-phosphate acyltransferase 3 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
4351119  probable glycerol-3-phosphate acyltransferase 3 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
4324826  glycerol-3-phosphate 2-O-acyltransferase 6 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
4338997  glycerol-3-phosphate acyltransferase 5 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
4326672  glycerol-3-phosphate acyltransferase 1 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
4334681  probable glycerol-3-phosphate acyltransferase 3 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
4338289  probable glycerol-3-phosphate acyltransferase 3 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
4338951  glycerol-3-phosphate 2-O-acyltransferase 6 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
4352530  probable glycerol-3-phosphate acyltransferase 3 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
4326728  probable glycerol-3-phosphate acyltransferase 3 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
4328061  glycerol-3-phosphate 2-O-acyltransferase 6 [KO:K13508] [EC:2.3.1.15 2.3.1.198]
107275959  glycerol-3-phosphate acyltransferase 1-like [KO:K13508] [EC:2.3.1.15 2.3.1.198]
4349006  1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [KO:K00655] [EC:2.3.1.51]
4350987  1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 [KO:K13523] [EC:2.3.1.51 2.3.1.-]
4339242  probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 [KO:K13513] [EC:2.3.1.- 2.3.1.51]
4327848  probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 [KO:K13513] [EC:2.3.1.- 2.3.1.51]
4330302  lysophospholipid acyltransferase 2 [KO:K13519] [EC:2.3.1.51 2.3.1.23 2.3.1.-]
4334536  triacylglycerol lipase SDP1 [KO:K14674] [EC:3.1.1.3 3.1.1.13 3.1.1.4 2.3.1.51]
4327023  triacylglycerol lipase SDP1 [KO:K14674] [EC:3.1.1.3 3.1.1.13 3.1.1.4 2.3.1.51]
4344352  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
4346295  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
4350917  phosphatidate phosphatase PAH2 isoform X1 [KO:K15728] [EC:3.1.3.4]
4339026  phosphatidate phosphatase PAH1 isoform X1 [KO:K15728] [EC:3.1.3.4]
4326857  lipid phosphate phosphatase 2 [KO:K18693] [EC:3.1.3.81 3.1.3.4]
4345367  lipid phosphate phosphatase 2 [KO:K18693] [EC:3.1.3.81 3.1.3.4]
4339523  lipid phosphate phosphatase 2 [KO:K18693] [EC:3.1.3.81 3.1.3.4]
4325474  putative lipid phosphate phosphatase 3, chloroplastic isoform X1 [KO:K18693] [EC:3.1.3.81 3.1.3.4]
4325649  lipid phosphate phosphatase 2 [KO:K18693] [EC:3.1.3.81 3.1.3.4]
4345366  lipid phosphate phosphatase 2 [KO:K18693] [EC:3.1.3.81 3.1.3.4]
4346680  lipid phosphate phosphatase 2 [KO:K18693] [EC:3.1.3.81 3.1.3.4]
4352615  diacylglycerol kinase 1 isoform X1 [KO:K00901] [EC:2.7.1.107]
4330961  diacylglycerol kinase 7 [KO:K00901] [EC:2.7.1.107]
4337126  diacylglycerol kinase 5 isoform X1 [KO:K00901] [EC:2.7.1.107]
4345076  diacylglycerol kinase 4 [KO:K00901] [EC:2.7.1.107]
4351807  diacylglycerol kinase 2 [KO:K00901] [EC:2.7.1.107]
9266342  diacylglycerol kinase 1 [KO:K00901] [EC:2.7.1.107]
4327055  diacylglycerol kinase 5 isoform X1 [KO:K00901] [EC:2.7.1.107]
4344812  diacylglycerol kinase 5 [KO:K00901] [EC:2.7.1.107]
4325407  non-specific phospholipase C2 [KO:K01114] [EC:3.1.4.3]
4326465  non-specific phospholipase C6 [KO:K01114] [EC:3.1.4.3]
4334641  non-specific phospholipase C1 [KO:K01114] [EC:3.1.4.3]
4350831  non-specific phospholipase C4 [KO:K01114] [EC:3.1.4.3]
4334815  non-specific phospholipase C4 [KO:K01114] [EC:3.1.4.3]
4349161  phospholipase D gamma 1 [KO:K01115] [EC:3.1.4.4]
4341467  phospholipase D alpha 2-like [KO:K01115] [EC:3.1.4.4]
4341468  phospholipase D alpha 2-like [KO:K01115] [EC:3.1.4.4]
4327647  phospholipase D alpha 1 [KO:K01115] [EC:3.1.4.4]
4337942  phospholipase D alpha 1-like [KO:K01115] [EC:3.1.4.4]
4341469  phospholipase D alpha 2 [KO:K01115] [EC:3.1.4.4]
4331421  phospholipase D beta 1 [KO:K01115] [EC:3.1.4.4]
4347745  phospholipase D delta [KO:K01115] [EC:3.1.4.4]
4347089  phospholipase D alpha 1 [KO:K01115] [EC:3.1.4.4]
4342872  phospholipase D delta isoform X1 [KO:K01115] [EC:3.1.4.4]
107277488  phospholipase D zeta 1-like isoform X1 [KO:K01115] [EC:3.1.4.4]
9272440  phospholipase D zeta 1 isoform X1 [KO:K01115] [EC:3.1.4.4]
4333024  phospholipase D alpha 1 [KO:K01115] [EC:3.1.4.4]
4334732  phospholipase D delta [KO:K01115] [EC:3.1.4.4]
4345514  phospholipase D alpha 1 [KO:K01115] [EC:3.1.4.4]
9266665  phospholipase D delta [KO:K01115] [EC:3.1.4.4]
4341683  phospholipase D Z [KO:K16860] [EC:3.1.4.4]
4333862  phospholipase A2 homolog 3 [KO:K01047] [EC:3.1.1.4]
4342043  lysophospholipid acyltransferase LPEAT2 [KO:K13510] [EC:2.3.1.23 2.3.1.67]
4338527  lysophospholipid acyltransferase LPEAT1 isoform X1 [KO:K13510] [EC:2.3.1.23 2.3.1.67]
107277936  phospholipase A(1) DAD1, chloroplastic-like [KO:K16818] [EC:3.1.1.32]
9269832  phospholipase A(1) LCAT3 isoform X1 [KO:K22389] [EC:3.1.1.32]
4336987  lecithin-cholesterol acyltransferase-like 4 [KO:K22389] [EC:3.1.1.32]
4337344  probable carboxylesterase Os04g0669500 [KO:K06130] [EC:3.1.1.5]
4327131  acyl-protein thioesterase 1 homolog 1 [KO:K06130] [EC:3.1.1.5]
4335072  acyl-protein thioesterase 1 homolog 1 [KO:K06130] [EC:3.1.1.5]
9269686  acyl-protein thioesterase 1 homolog 1 isoform X1 [KO:K06130] [EC:3.1.1.5]
4329468  glycerophosphodiester phosphodiesterase GDPD1, chloroplastic isoform X1 [KO:K18696] [EC:3.1.4.46]
4335688  glycerophosphodiester phosphodiesterase GDPD2 [KO:K18696] [EC:3.1.4.46]
4346156  glycerophosphodiester phosphodiesterase GDPD1, chloroplastic isoform X1 [KO:K18696] [EC:3.1.4.46]
4327034  glycerophosphodiester phosphodiesterase GDPD6 [KO:K01126] [EC:3.1.4.46]
4333407  glycerophosphodiester phosphodiesterase GDPD6 [KO:K01126] [EC:3.1.4.46]
4343833  glycerophosphodiester phosphodiesterase GDPD6 [KO:K01126] [EC:3.1.4.46]
9268113  probable choline kinase 2 [KO:K14156] [EC:2.7.1.32 2.7.1.82]
4325332  probable choline kinase 1 [KO:K14156] [EC:2.7.1.32 2.7.1.82]
4325586  probable choline kinase 2 [KO:K14156] [EC:2.7.1.32 2.7.1.82]
4324704  inorganic pyrophosphatase 1 [KO:K06124] [EC:3.1.3.75]
4328455  choline-phosphate cytidylyltransferase 1 [KO:K00968] [EC:2.7.7.15]
4349510  choline-phosphate cytidylyltransferase 2 [KO:K00968] [EC:2.7.7.15]
4344725  choline-phosphate cytidylyltransferase 2 [KO:K00968] [EC:2.7.7.15]
4328107  choline/ethanolaminephosphotransferase 1 [KO:K00993] [EC:2.7.8.1]
4340428  choline/ethanolaminephosphotransferase 1 [KO:K00993] [EC:2.7.8.1]
107280579  serine decarboxylase 3 [KO:K25193] [EC:4.1.1.-]
4329593  serine decarboxylase 1 [KO:K25193] [EC:4.1.1.-]
9270894  serine decarboxylase 2 [KO:K25193] [EC:4.1.1.-]
107276219  serine decarboxylase 3-like [KO:K25193] [EC:4.1.1.-]
4347160  probable ethanolamine kinase [KO:K00894] [EC:2.7.1.82]
4351359  ethanolamine-phosphate cytidylyltransferase [KO:K00967] [EC:2.7.7.14]
4344972  ethanolamine-phosphate cytidylyltransferase [KO:K00967] [EC:2.7.7.14]
4349636  ethanolamine-phosphate cytidylyltransferase [KO:K00967] [EC:2.7.7.14]
4348512  ethanolamine-phosphate cytidylyltransferase [KO:K00967] [EC:2.7.7.14]
4323890  phosphoethanolamine N-methyltransferase 1 [KO:K05929] [EC:2.1.1.103]
4339516  phosphomethylethanolamine N-methyltransferase [KO:K05929] [EC:2.1.1.103]
4329961  phosphatidyl-N-methylethanolamine N-methyltransferase [KO:K00550] [EC:2.1.1.71]
4325310  phosphatidate cytidylyltransferase 1 [KO:K00981] [EC:2.7.7.41]
4348326  phosphatidate cytidylyltransferase 1 isoform X1 [KO:K00981] [EC:2.7.7.41]
4328160  phosphatidate cytidylyltransferase 4, chloroplastic [KO:K00981] [EC:2.7.7.41]
4339554  CDP-diacylglycerol--serine O-phosphatidyltransferase 2 [KO:K08730] [EC:2.7.8.29]
4326076  CDP-diacylglycerol--serine O-phosphatidyltransferase 1 isoform X4 [KO:K08730] [EC:2.7.8.29]
9271420  CDP-diacylglycerol--serine O-phosphatidyltransferase 3-like [KO:K08730] [EC:2.7.8.29]
4331292  phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X2 [KO:K01613] [EC:4.1.1.65]
4325237  phosphatidylserine decarboxylase proenzyme 2 [KO:K01613] [EC:4.1.1.65]
4332460  cardiolipin synthase (CMP-forming), mitochondrial [KO:K00995] [EC:2.7.8.5]
4325633  uncharacterized protein YqeG [KO:K01094] [EC:3.1.3.27]
4325867  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic [KO:K08744] [EC:2.7.8.41]
4326817  uncharacterized protein LOC4326817 [KO:K13511] [EC:2.3.1.-]
4337323  N-acylphosphatidylethanolamine synthase [KO:K13511] [EC:2.3.1.-]
4328140  probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [KO:K00999] [EC:2.7.8.11]
Compound
C00040  Acyl-CoA
C00065  L-Serine
C00084  Acetaldehyde
C00093  sn-Glycerol 3-phosphate
C00111  Glycerone phosphate
C00114  Choline
C00157  Phosphatidylcholine
C00189  Ethanolamine
C00269  CDP-diacylglycerol
C00307  CDP-choline
C00344  Phosphatidylglycerol
C00346  Ethanolamine phosphate
C00350  Phosphatidylethanolamine
C00416  Phosphatidate
C00513  CDP-glycerol
C00570  CDP-ethanolamine
C00588  Choline phosphate
C00623  sn-Glycerol 1-phosphate
C00641  1,2-Diacyl-sn-glycerol
C00670  sn-Glycero-3-phosphocholine
C00681  1-Acyl-sn-glycerol 3-phosphate
C01194  1-Phosphatidyl-D-myo-inositol
C01210  N-Methylethanolamine phosphate
C01233  sn-Glycero-3-phosphoethanolamine
C01241  Phosphatidyl-N-methylethanolamine
C01996  Acetylcholine
C02737  Phosphatidylserine
C03372  Acylglycerone phosphate
C03819  1-Acylglycerophosphoinositol
C03872  L-Serine-phosphoethanolamine
C03892  Phosphatidylglycerophosphate
C03974  2-Acyl-sn-glycerol 3-phosphate
C04230  1-Acyl-sn-glycero-3-phosphocholine
C04233  2-Acyl-sn-glycero-3-phosphocholine
C04308  Phosphatidyl-N-dimethylethanolamine
C04438  1-Acyl-sn-glycero-3-phosphoethanolamine
C04590  3-(O-Geranylgeranyl)-sn-glycerol 1-phosphate
C04638  2,3-Bis-(O-geranylgeranyl)-sn-glycerol 1-phosphate
C05973  2-Acyl-sn-glycero-3-phosphoethanolamine
C05974  2-Acyl-sn-glycero-3-phosphoserine
C05976  Aminoacyl-phosphatidylglycerol
C05980  Cardiolipin
C06771  Triethanolamine
C06772  Diethanolamine
C13482  Phosphodimethylethanolamine
C18059  CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol
C18125  1-Acyl-sn-glycero-3-phosphoserine
C18126  1-Acyl-sn-glycero-3-phosphoglycerol
C18129  Monolysocardiolipin
C18168  Diacylglycerylhomoserine
C18169  Diacylglyceryl-N,N,N-trimethylhomoserine
C20466  2,3-Bis-(O-geranylgeranyl)-sn-glycero-1-phospho-L-serine
C20518  2,3-Bis-(O-phytanyl)-sn-glycerol 1-phosphate
C22340  Heptaprenylglyceryl phosphate
C22341  Heptaprenylglycerol
C22342  Diacetylheptaprenylglycerol
Reference
PMID:1512203
  Authors
Racenis PV, Lai JL, Das AK, Mullick PC, Hajra AK, Greenberg ML.
  Title
The acyl dihydroxyacetone phosphate pathway enzymes for glycerolipid biosynthesis are present in the yeast Saccharomyces cerevisiae.
  Journal
J Bacteriol 174:5702-10 (1992)
DOI:10.1128/JB.174.17.5702-5710.1992
Reference
  Authors
Taniyama Y, Shibata S, Kita S, Horikoshi K, Fuse H, Shirafuji H, Sumino Y, Fujino M.
  Title
Cloning and expression of a novel lysophospholipase which structurally resembles lecithin cholesterol acyltransferase.
  Journal
Biochem Biophys Res Commun 257:50-6 (1999)
DOI:10.1006/bbrc.1999.0411
Reference
  Authors
Athenstaedt K, Daum G.
  Title
Phosphatidic acid, a key intermediate in lipid metabolism.
  Journal
Eur J Biochem 266:1-16 (1999)
DOI:10.1046/j.1432-1327.1999.00822.x
Reference
  Authors
Shields DJ, Lehner R, Agellon LB, Vance DE.
  Title
Membrane topography of human phosphatidylethanolamine N-methyltransferase.
  Journal
J Biol Chem 278:2956-62 (2003)
DOI:10.1074/jbc.M210904200
Reference
  Authors
Martinez-Morales F, Schobert M, Lopez-Lara IM, Geiger O.
  Title
Pathways for phosphatidylcholine biosynthesis in bacteria.
  Journal
Microbiology 149:3461-71 (2003)
DOI:10.1099/mic.0.26522-0
Reference
  Authors
Burgermeister M, Birner-Grunberger R, Nebauer R, Daum G.
  Title
Contribution of different pathways to the supply of phosphatidylethanolamine and phosphatidylcholine to mitochondrial membranes of the yeast Saccharomyces cerevisiae.
  Journal
Biochim Biophys Acta 1686:161-8 (2004)
DOI:10.1016/j.bbalip.2004.09.007
Reference
PMID:1649829
  Authors
Hsu L, Jackowski S, Rock CO
  Title
Isolation and characterization of Escherichia coli K-12 mutants lacking both 2-acyl-glycerophosphoethanolamine acyltransferase and acyl-acyl carrier protein synthetase activity.
  Journal
J Biol Chem 266:13783-8 (1991)
Reference
  Authors
Stone SJ, Vance JE.
  Title
Phosphatidylserine synthase-1 and -2 are localized to mitochondria-associated membranes.
  Journal
J Biol Chem 275:34534-40 (2000)
DOI:10.1074/jbc.M002865200
Related
pathway
osa00010  Glycolysis / Gluconeogenesis
osa00260  Glycine, serine and threonine metabolism
osa00561  Glycerolipid metabolism
osa00562  Inositol phosphate metabolism
osa00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
osa00565  Ether lipid metabolism
osa00620  Pyruvate metabolism
KO pathway
ko00564   
LinkDB

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