KEGG PATHWAY: osa03440

KEGG

PATHWAY: osa03440

Entry

osa03440                    Pathway

Name

Homologous recombination - Oryza sativa japonica (Japanese rice)

Description

Homologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves the generation of a single-stranded region of DNA, followed by strand invasion, formation of a Holliday junction, DNA synthesis using the intact strand as a template, branch migration and resolution. It is investigated that RecA/Rad51 family proteins play a central role. The breast cancer susceptibility protein Brca2 and the RecQ helicase BLM (Bloom syndrome mutated) are tumor suppressors that maintain genome integrity, at least in part, through HR.

Class

Genetic Information Processing; Replication and repair

Pathway map

Homologous recombination

Other DBs

GO:

Organism

Oryza sativa japonica (Japanese rice) [GN:osa]

Gene

single-stranded DNA-binding protein, mitochondrial [KO:K03111]

DNA repair protein RecA homolog 3, mitochondrial [KO:K03553]

DNA repair protein RecA homolog 1, chloroplastic isoform X1 [KO:K03553]

DNA repair protein RecA homolog 3, mitochondrial [KO:K03553]

DNA polymerase I A, chloroplastic-like isoform X1 [KO:K02335] [EC:2.7.7.7]

OsJ_26226; DNA polymerase I A, chloroplastic [KO:K02335] [EC:2.7.7.7]

DNA polymerase I B, mitochondrial isoform 1 [KO:K02335] [EC:2.7.7.7]

ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 [KO:K03655] [EC:5.6.2.4]

DNA repair protein RAD50 [KO:K10866] [EC:3.6.-.-]

MRE11; double-strand break repair protein MRE11 [KO:K10865]

NBS1; nibrin homolog [KO:K10867]

serine/threonine-protein kinase ATM isoform X1 [KO:K04728] [EC:2.7.11.1]

protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1 [KO:K10683]

BRCA1-associated RING domain protein 1 isoform X1 [KO:K10683]

BRCA1-associated RING domain protein 1 [KO:K10683]

uncharacterized protein [KO:K15362] [EC:5.6.2.3]

BRCT domain-containing protein At4g02110 [KO:K10728]

LOW QUALITY PROTEIN: BRCT domain-containing protein At4g02110-like [KO:K10728]

uncharacterized protein [KO:K10728]

uncharacterized protein [KO:K20776]

uncharacterized protein [KO:K12173]

uncharacterized protein [KO:K11864] [EC:3.4.19.-]

protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X1 [KO:K08775]

protein DELETION OF SUV3 SUPPRESSOR 1(I) [KO:K10881]

protein DELETION OF SUV3 SUPPRESSOR 1(I) [KO:K10881]

OsJ_16860; replication protein A 70 kDa DNA-binding subunit C [KO:K07466]

OsJ_08582; replication protein A 70 kDa DNA-binding subunit A [KO:K07466]

OsJ_09906; replication protein A 70 kDa DNA-binding subunit B [KO:K07466]

OsJ_08977; replication protein A 32 kDa subunit A [KO:K10739]

OsRPA32-2; replication protein A 32 kDa subunit B [KO:K10739]

OsJ_01130; replication protein A 14 kDa subunit isoform X2 [KO:K10740]

DNA repair protein RAD51 homolog A [KO:K04482]

DNA repair protein RAD51 homolog B [KO:K04482]

DNA repair protein RAD51 homolog 2 [KO:K10869]

DNA repair protein RAD51 homolog 3 isoform X1 [KO:K10870]

DNA repair protein RAD51 homolog 4 isoform X1 [KO:K10871]

DNA repair protein XRCC3 homolog [KO:K10880]

OsJ_08484; dNA repair and recombination protein RAD54 [KO:K10875] [EC:5.6.2.-]

SNF2 domain-containing protein CLASSY 4 [KO:K10875] [EC:5.6.2.-]

protein CHROMATIN REMODELING 35 isoform X1 [KO:K10875] [EC:5.6.2.-]

protein CHROMATIN REMODELING 35 isoform X2 [KO:K10875] [EC:5.6.2.-]

SNF2 domain-containing protein CLASSY 1 [KO:K10875] [EC:5.6.2.-]

protein CHROMATIN REMODELING 35 isoform X2 [KO:K10875] [EC:5.6.2.-]

protein CHROMATIN REMODELING 35 [KO:K10875] [EC:5.6.2.-]

SNF2 domain-containing protein CLASSY 4 [KO:K10875] [EC:5.6.2.-]

OspolD1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]

OJ1528D07.1; DNA polymerase delta small subunit [KO:K02328]

uncharacterized protein [KO:K03504]

P0669G04.6; uncharacterized LOC4347604 [KO:K03505]

uncharacterized protein [KO:K03505]

uncharacterized protein [KO:K03505]

ATP-dependent DNA helicase Q-like 3 [KO:K10901] [EC:5.6.2.4]

ATP-dependent DNA helicase Q-like 4A [KO:K10901] [EC:5.6.2.4]

TOP3B; DNA topoisomerase 3-beta [KO:K03165] [EC:5.6.2.1]

DNA topoisomerase 3-alpha [KO:K03165] [EC:5.6.2.1]

ERCC4; crossover junction endonuclease MUS81 [KO:K08991] [EC:3.1.22.-]

EME1; crossover junction endonuclease EME1 [KO:K10882] [EC:3.1.22.-]

Reference

Authors

Maloisel L, Fabre F, Gangloff S.

Title

DNA polymerase delta is preferentially recruited during homologous recombination to promote heteroduplex DNA extension.

Journal

Mol Cell Biol 28:1373-82 (2008)
DOI:10.1128/MCB.01651-07

Reference

Authors

Haruta-Takahashi N, Iwasaki H.

Title

[Recombination mediators]

Journal

Seikagaku 79:449-53 (2007)

Reference

Authors

Ouyang KJ, Woo LL, Ellis NA.

Title

Homologous recombination and maintenance of genome integrity: Cancer and aging through the prism of human RecQ helicases.

Journal

Mech Ageing Dev 129:425-40 (2008)
DOI:10.1016/j.mad.2008.03.003

Reference

Authors

Kawabata M, Kawabata T, Nishibori M.

Title

Role of recA/RAD51 family proteins in mammals.

Journal

Acta Med Okayama 59:1-9 (2005)
DOI:10.18926/AMO/31987

Reference

Authors

Prado F, Cortes-Ledesma F, Huertas P, Aguilera A.

Title

Mitotic recombination in Saccharomyces cerevisiae.

Journal

Curr Genet 42:185-98 (2003)
DOI:10.1007/s00294-002-0346-3

Reference

Authors

Heyer WD, Li X, Rolfsmeier M, Zhang XP.

Title

Rad54: the Swiss Army knife of homologous recombination?

Journal

Nucleic Acids Res 34:4115-25 (2006)
DOI:10.1093/nar/gkl481

Reference

Authors

Michel B, Boubakri H, Baharoglu Z, LeMasson M, Lestini R.

Title

Recombination proteins and rescue of arrested replication forks.

Journal

DNA Repair (Amst) 6:967-80 (2007)
DOI:10.1016/j.dnarep.2007.02.016

KO pathway

LinkDB

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