Pectobacterium atrosepticum JG10-08: EV46_15400
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Entry
EV46_15400 CDS
T03199
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
patr
Pectobacterium atrosepticum JG10-08
Pathway
patr00040
Pentose and glucuronate interconversions
patr01100
Metabolic pathways
patr02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
patr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
EV46_15400
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
EV46_15400
Enzymes [BR:
patr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
EV46_15400
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-ProteinID:
AIA71936
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Position
complement(3443401..3444969)
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AA seq
522 aa
AA seq
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MFRTVIGTGRLRTCAVAIALSGIILSGCDNSQQPVAETAPPDLQVKTTPFGWAAQYQNTD
GKFYATTGGEGAHENSIYIVTNRQELKDALNNIRSARYIAGDSDAELQAKLEPKIIYWQG
TVRGDDLGNGRNANAEDYKTKPNKTTFDFDLYVKAFDQNYMAQLKATADAGGADAAAASA
ELSLLKKQNGQRSQYANNQKAQIQFQVPPNTTILGVGSDAKLVEGYLSLNTLSHTFGKTD
NSNIIIRNITFQAPRDFAPAWDAGDGEKGNWNARYDSVSINASKNVWVDHCTFTDGEYPD
HLEPVLFGKHIQRHDGLLDIEDGADYLTISYNIFAQHDKTVLIGSGDGDKGEYRITFEGN
LWDNSVQRSPRVRFGQVHLLNNYHRGATDTNYPILYAIGMGFDSSILSESNVFNFEGGNA
DEKLIIGAYKGSKFKDNGSWFNGNPASNLNQIALDKCSALQETEKAAATSSGKAVPGWAL
ETCTNELEWSPPYVYSVGKSIAAVEKYVLENAGSGKLDISLP
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtttagaacggttattgggactggtcgcttacgcacctgtgcggtagctattgccctt
tcagggataatactttctgggtgtgacaatagtcagcagccagtggcagaaacggcgccg
ccagatttgcaggtgaaaaccaccccgtttggttgggctgcacaatatcagaacacggat
ggtaagttttacgcaacgacgggaggtgagggcgcacatgaaaatagcatttatatcgtc
accaatcgtcaggaattgaaagacgcgttaaataatatccgcagcgcacgttatatcgca
ggcgattccgatgcggagttacaggcaaaattagaacctaagattatctattggcaaggt
actgtccgtggtgatgatttagggaatggacgtaatgcgaatgcggaggattataaaacc
aaaccgaataaaactacgttcgatttcgatttatatgtcaaagccttcgatcagaattat
atggcgcagctgaaagccacggcagatgcgggtggagctgatgcggcagcagccagtgca
gagcttagcctgttgaaaaaacagaatggtcagcgttcacagtatgctaacaatcagaaa
gcgcagattcaatttcaggttccgccgaataccacgattttaggtgtaggtagcgacgcc
aaactggtggaaggctatttatccctcaatacgttaagccacacgttcggcaaaacggat
aacagcaacatcattatccgcaatattacgtttcaggcaccgcgtgactttgccccagct
tgggatgcgggcgacggtgagaaaggcaactggaatgcgcgttatgattctgtatcaatt
aatgccagcaaaaatgtctgggtcgaccactgcacctttacggatggtgaatatcctgat
catttagagccggtgctgttcggtaaacatatccaacgccacgatggcctgctggatata
gaagatggtgctgattacctgacgatttcctacaacatttttgctcagcatgacaaaaca
gtattaatcggctctggtgacggcgataaaggggaatatcggatcacctttgaaggcaat
ttatgggacaacagcgtgcagcgttcaccgcgtgtgcgttttggtcaggtgcatttgctg
aataactatcatcgtggcgcaacggatacaaactatcccattctgtatgccattgggatg
ggcttcgattcatcgattctttctgagagtaacgtttttaacttcgagggcggcaatgca
gacgaaaaactgattattggtgcttataagggaagtaagtttaaagacaacggttcctgg
ttcaatggcaatccggcaagcaatttgaatcaaatcgcattggataagtgcagcgcactg
caagaaaccgagaaagccgctgcgacaagctctgggaaagcggtgccgggatgggcgctg
gagacttgcaccaatgaattggaatggagcccgccttatgtgtatagcgttgggaaatcc
atcgccgccgttgagaaatatgtcctggaaaatgctggctctggaaagctggatatttct
ctcccctag
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