Phragmites australis (common reed): 133884567
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Entry
133884567 CDS
T10575
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
paua Phragmites australis (common reed)
Pathway
paua03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133884567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paua03400
]
133884567
DNA repair and recombination proteins [BR:
paua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
133884567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
133884567
NCBI-ProteinID:
XP_062180010
LinkDB
All DBs
Position
11:21988301..21995130
Genome browser
AA seq
1438 aa
AA seq
DB search
MDRSARRARRRGGTLEAAAAAPSSSSRTRHRDKGAPVVIDLVDDDDDCGGGAADGAASRR
GGSTVVPPPPPTMMVPAGAVAMRTRSRRLVMQAAVAAPEGESPRTKRRRKGASADATEAP
GAGGSKSARASRSASRGKRRGLSRRKPEPESRGRVHKRKGKEMEVEAEVGAATRGKRAVS
RVTESDGNGGRGDDASRDENESCTGGANGIDQGNVDRRRDTGGDQIEEHCADLQVSAVDL
NHVTNGVVSCDAEEGEGGGDEGWRRDGGINVDEGMGNCGNKELAPVADVVTELASFEDDY
DDEMLEEQLVGDVIRAYSTGGDLDPDRVDWEAEDEMEFDDADDGDSMDDDDEGGMSESMH
DRAKMETEDSVDHKIVLGGLRCQEEEKADIKDETGPKTEGAPGFDQGSLHIEILDSDDEV
KVLNNVSSVPTRKVPVQAKLPVIPSCVAWRTRSSWGIKQDRLSYNTYFEALSDEPKEDDY
DTEVELDEEENDSNDDDSSESYAKNEEEEEEEEEEEEEEAERRKLKNGIDASDDDMIDST
IPTSRYDFEWGEDEDPDVDIFRSITFKKDGSGDPVGNDTVTEQQKRSRFTWELERRKKLK
LGIMKTHRLYERDLDSDLDSSDSDQIRRYGFRRDGDHKVGKKKKHPPSKSGKKSSRATML
KRQSLLKLLIDKMSGDKNEEFLTFDQNPQLEFTFKDMHPLVFSFGDEDPIPADRPEKDVS
LDMLWADFDFALESENIGTYYDDEGPEEGNQLNIGLASVTPCSRGKHDFIIDDQIGIRCK
YCSLVNLEIRFMLPSLVSGSAEKLAWPNASGVKNALMFHDLYEQAGSGTEQSQDFHLYGT
VWDLIPGVITTMYEHQREAFEFMWTNLVGDIRLDELKHGAKPDVVGGCVICHAPGTGKTR
LAIVFIQTYMKVFPDCRPVIIAPRGMLFAWDEEFKKWNVDVPFHIMNTTDYTGKEDRDIC
RLIKKEHRTEKLTRLVKLLSWNRGHGILGISYGLYTKLTSEKSDCTEENKVRSILLDNPG
LLVLDEGHTPRNERSVMWKTLGKVKTEKRIILSGTPFQNNFLELYNILCLVRPRFGEMFL
TKAKVGRRHYVSKKKRDKFSDKYEKGVWASLTSNVTDDNAEKVRSILKPFVHIHNGNILR
TLPGLRESVIILKPRPLQKSIIRKVENIGSGNNFEHEYVISLASTHPSLVTAINMSDEEA
SLIDKPMLERLRSNPYEGVKTRFVMEVVRLCEALREKVLIFSQFIQPLELIKDHLRKFFK
WREGKEILQMDGKILPRYRQASIEAFNNPDNDSRVLLASTRACCEGISLTGASRVVLLDV
VWNPAVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFSTEDEFN
NVRNMLSKAEMEHCSKLISEDKVLEEMTSHDQLKGMFLKIHYPPTESNIVFTYNQIAP
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atggatcgctccgcgcggcgcgcccgtcgccgcggcggaaccctagaggcggcggcggcg
gcgccgtcatcctcctcccgcacgcgccaccgtgacaagggggcgccggttgtcatcgac
cttgttgacgacgacgacgactgcggcggcggggcggcggatggtgctgcgagcaggcga
ggaggttcgacggtggtgcctccgcctccgccgacgatgatggtgccggcaggggcggtg
gcgatgcggacgcgatcgcggaggctggtgatgcaggcggcggtggcggcgccggagggg
gagtcgccgagaacgaagaggaggaggaagggagcgagcgcggatgccacggaggctccg
ggcgccggagggagcaagagcgccagggcctcgaggtcggcgtcgagagggaagcggcgt
ggactctcgcgacgaaagccagagcctgagagcaggggccgagtgcacaagcgcaagggc
aaggagatggaagtggaagcagaggtgggggcggctactcgtggaaaacgggcggtgtca
cgtgtcactgaaagtgatggaaacggcgggcgaggcgatgatgcttctcgcgatgagaat
gagtcttgcactgggggcgccaatggcattgatcagggtaacgtggatcgtcgcagagac
actggtggggatcagattgaggagcattgcgcagacctgcaggtcagtgctgtggatttg
aatcatgtgaccaatggagtggtctcatgtgatgcagaggaaggggaaggtggtggtgat
gagggatggaggcgagatggtggtattaatgtcgacgagggcatggggaactgtgggaac
aaggagctggcaccagttgcggatgtggtgactgagttggcatcctttgaagatgactac
gacgacgagatgctggaggagcagcttgttggagatgttatccgtgcttacagcactggt
ggagacttggatccagatagagtggattgggaggctgaggatgagatggaatttgatgat
gctgatgacggcgattctatggatgacgatgatgaaggtggcatgtctgaatcgatgcac
gaccgtgctaagatggaaacggaagactcggtggaccataagattgttttgggtgggttg
aggtgtcaggaggaggagaaagcagatatcaaggatgagacggggccaaagacagaagga
gctccgggttttgatcaagggagcttgcatatagaaatcctggactctgacgatgaagtc
aaggtgctcaataatgtgagtagtgtccccaccaggaaggtgcctgtgcaagcaaagtta
ccagttattccatcttgtgttgcatggagaactcgatcatcatgggggattaagcaagat
aggctatcgtacaatacatatttcgaggcattgtctgatgagccgaaagaggatgattat
gatacagaagtggaactagatgaagaggagaatgacagcaatgatgatgatagtagtgaa
agttatgctaaaaatgaagaagaggaagaggaagaggaagaggaagaggaagaagaggct
gaaaggagaaaactcaagaatgggattgatgcatctgatgatgacatgattgatagtacc
attcctacctcaagatatgattttgagtggggggaggatgaagacccagatgttgatatc
tttcggtcaattacatttaagaaagatggcagtggggaccctgtgggcaatgacacagtt
actgagcaacagaagcgatcacgatttacttgggagcttgagaggaggaaaaagcttaag
cttgggataatgaagacgcatcgcttatatgagcgggacttggactcagatttagactca
tcagattctgaccagattagaaggtatggattccgaagggatggtgatcataaagttgga
aagaaaaagaagcatccgccatccaaatcgggcaagaaatccagccgtgcaaccatgcta
aagaggcagtctcttctgaagcttttgatagataaaatgagtggcgataaaaatgaagaa
tttttaacatttgatcagaatccgcagctcgagtttactttcaaggatatgcatccattg
gtgttttcatttggagatgaagatccaataccagctgacaggccagagaaagatgtttca
ttggatatgttatgggctgactttgactttgctttagagtcagagaatattggaacttat
tacgatgacgagggtccagaagagggcaatcagctaaatattggtcttgcttcagtaaca
ccttgttctcgagggaagcatgattttatcattgatgatcaaataggaatcagatgcaaa
tattgctccttagtaaatctggagatcagattcatgttgccatcattggtctcaggttct
gcagagaaacttgcatggccaaatgcctctggtgtgaagaacgctttgatgtttcacgat
ctttatgaacaagcaggcagtgggactgagcaatctcaagattttcatctatatggaaca
gtttgggatctcattccaggggtcattactactatgtatgagcatcagcgtgaagcattt
gaatttatgtggacaaatctagttggtgatatcaggcttgatgagctgaagcatggagcg
aagcctgatgttgttggaggatgtgtgatctgtcatgccccagggacgggaaagacgcga
ttggctattgtatttatccagacatatatgaaggtctttccagactgccggccagtgatt
attgcacctcgtgggatgctctttgcttgggatgaggagtttaagaaatggaatgttgat
gttcctttccatattatgaacacgacggattacactggaaaagaggaccgagacatatgt
aggttaataaagaaagaacatcggacagaaaagttgacaaggcttgtgaaactgctttca
tggaacaggggtcatggtattcttggaataagttatggcctatatacgaaactaacatct
gaaaagtctgactgcacagaagagaacaaagtaaggagcattcttcttgataaccctggt
ttacttgttcttgatgaaggtcacacacctaggaatgagcgtagcgtgatgtggaagaca
ttaggaaaagttaaaactgaaaagcgtataattctatctgggactcctttccagaataat
tttcttgagctttacaacatactctgtttggtaaggcccaggtttggtgaaatgtttttg
actaaagcaaaagtgggtcgaaggcactatgtctcgaagaagaaaagagataagttttct
gataaatatgaaaaaggagtttgggcttcacttacgagtaatgtaactgatgataatgca
gagaaagtacgatcaatattgaaaccatttgttcatatccataatgggaacattcttcga
actcttccagggcttagagagtctgtgattattctgaaacctcgtccccttcaaaagagc
atcattagaaaggtggaaaacattggttccggtaataactttgaacatgaatatgtcatt
tctttagcctctacacacccttcccttgtaactgccattaacatgtctgatgaggaagct
tcacttattgataaacctatgcttgaaagattaaggtcaaatccctatgaaggggtaaaa
acaagatttgtaatggaagttgttcgtttgtgcgaagcactaagagaaaaagtattgatt
tttagccaatttattcagccattagaactgataaaagatcatcttcgtaagtttttcaaa
tggagagaagggaaggaaattcttcaaatggatggaaagatccttccaagatatcgccag
gcttcaattgaagctttcaacaatccagacaatgattcccgggttttacttgcatctaca
agagcctgctgtgaagggattagcttgacaggagcttcaagagttgtgcttctagatgtt
gtttggaacccagctgttgggaggcaggccatcagcagggcgtttaggataggtcagaag
aaatttgtatatacatacaatttgataacttatggaacaggcgaaggtgacaaatatgac
aggcaagcagaaaaggatcacttgtccaagttggtcttctctacagaagatgagttcaac
aatgttaggaacatgctatcaaaagctgaaatggagcactgttctaagttgatttcagaa
gataaggttttggaggagatgacttcccatgaccaacttaaaggcatgtttttgaagatt
cattatccaccaaccgagtcaaacattgtttttacttacaatcaaattgctccctga
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integrated database retrieval system
