Phragmites australis (common reed): 133899591
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Entry
133899591 CDS
T10575
Name
(RefSeq) protein CHROMATIN REMODELING 35-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
paua Phragmites australis (common reed)
Pathway
paua03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133899591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paua03400
]
133899591
DNA repair and recombination proteins [BR:
paua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
133899591
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
RAG1_imp_bd
Motif
Other DBs
NCBI-GeneID:
133899591
NCBI-ProteinID:
XP_062196575
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Position
18:complement(10089510..10099247)
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AA seq
973 aa
AA seq
DB search
MHLKPTNYFFIDFRWGIPLMLSPQKNSEPCQAKCCLGVYYRRQKKSSEPNSSGFALPVAN
SIGSWGYGSASKDWENIRLRKVQLINFLSSLQRPTENSVITNKMTNGKMTNHSMEQTEQK
ERTDIIVLDSDDEDGNIAGYEKLSPEINKQLTASELAGSFTKWVASNGRDQANETMLAEG
DNNTQIIPYGQSAALVNQFPLETSWQPSIQFERVVLQKRPEEARMQDLVAASIAEKRAET
QVFFSLPTEKKRRRSEPRLHVTEDAATVPKQRKRKRKGDLDPAEADFSLDLQQTGISSET
NMPLEEEEKPIKESDGLEDYWKDFALAVESTKLDTVDEAANEKEVDNEKEDNDCTHDIRI
HEDLGHVCRVCGMIVRRADSIIDYQWKKASRRRTNFYEGHSKDADEMDYGPVKLSEDFIV
ADIAIHPRHAKQMRPHQLEGFNFLVKNLVADKPGGCILAHAPGSGKTFMLISFIQSFLAR
YPSARPLVVLPKGILGTWKREVQRWQVQDIPLYDFYSVKADKRIEQLEVLKSWEANMSIL
FLGYKQFSRIISGDGGGSVAAACRDRLLKVPNLLILDEGHTPRNRDTDVLETLNRVETPR
KVVLSGTLFQNHVEEVFNILNLVRPKFLKMESSRPIIRRIMSQVAISGRSSKGIPDSAFT
ESVEETLLNDDNFKRKAHVIRGLRELTKDVLHYYKGDILDELPGLVDFSVFLKLTPKQKD
IVHKLGAYEKFKRSAVGTAVYVHPCLSEISEVNAEDRANSLTDKSVDAMIDSVNVRDGVK
ARFFINILSLTNSAGEKLLAFSQYILPMKFLERLLVKMKGWHVGKEIFVISGDTSPEDRE
LAMDQFNNSADAKVLFGSIKACGEGISLVGASRVVILDVHLNPSVTRQAIGRAFRPGQLK
KVFVYRLVAAESPEEKFHETAFKKEVIPKLWFEWTEHCTTEDFKLDQIDIDDCGDELLDS
KAMRQDIKALYRR
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttaagcccaccaattatttttttatagattttaggtggggcattcccctgatg
ttgagccctcaaaagaattctgaaccttgtcaggcgaagtgttgcctaggcgtgtattac
cgcaggcaaaagaaatcttctgagcccaacagcagtggttttgcactgcctgttgcaaat
agcattggcagttggggatacggcagtgctagcaaggattgggaaaatattcgccttcgc
aaggtccaattgatcaacttcctttctagtctgcaacgccccactgaaaattctgtgata
accaacaaaatgaccaatggcaaaatgaccaatcattctatggagcaaacagaacaaaaa
gaaaggacagacataatagttcttgattcagacgatgaggatggaaacattgcaggatac
gaaaagttgtcacctgagataaacaaacaactgacagcctctgaattggctggtagtttc
acaaaatgggtggcatccaacgggagggaccaagcaaatgaaaccatgcttgctgaagga
gacaacaacacacaaattattccatatggtcaaagtgcagctttagtgaatcaatttcct
ttggaaaccagctggcaaccatctattcagtttgagagagttgtgttgcagaaaaggcct
gaggaggcgcgtatgcaagatctagtggctgctagcatcgcggagaagagagcagaaaca
caagttttcttttcgcttcctacggagaaaaaacgaaggagatcagaacccaggttgcat
gtcactgaagatgctgcaactgtccctaaacaaagaaaaaggaaaagaaaaggtgatctg
gatccagcagaagctgatttctcattggatttacagcaaactggtatttcatcagaaaca
aacatgcctttggaggaagaggagaaaccaataaaggaaagtgatggtctagaagattat
tggaaagattttgcattggctgttgaaagcacaaagcttgacacagttgatgaggcagca
aatgagaaagaagtggataatgaaaaggaggacaatgactgcactcatgacatacggatt
catgaagatttgggccatgtatgccgtgtctgtggtatgattgtgagaagggctgattca
ataattgattatcagtggaaaaaggcttcaagaagaagaacaaatttctatgaaggacat
tcgaaggatgctgatgagatggactacggtcctgttaagctgtccgaagatttcatagtt
gcagatatcgctattcatccaagacatgctaagcaaatgagaccacatcagttggaagga
ttcaacttcttggttaagaatttggttgcagacaagcctggaggttgcattctcgctcat
gcccctggttcagggaaaacatttatgcttataagtttcattcagagcttcctggcaagg
tatccatctgcaaggccccttgttgtgcttcccaaaggcatattaggtacatggaagagg
gaagttcaacggtggcaagtacaggatataccattgtatgatttctattctgttaaggct
gacaaaagaatagagcaattggaagtcctcaaatcttgggaagccaatatgagtatactg
tttcttgggtacaagcagttctcaagaatcatctctggagatgggggtggcagcgttgca
gctgcatgtcgtgacagactgcttaaggtccccaacctgctgatacttgacgagggtcat
acacctagaaatcgggacacggatgtactagaaacactgaatagagtagaaacaccacgc
aaagtggtcctttcaggtacacttttccagaatcatgttgaggaagtgtttaacatcttg
aatcttgttcgcccaaagtttctgaagatggagtcatcccgtcctattattagacgtata
atgagtcaagtagcaatatcaggtagaagttcgaaaggaattcctgacagtgcattcact
gagtcagtggaagaaaccttgttgaatgatgacaacttcaagagaaaagctcatgttatt
agaggtcttagagaactaacaaaggatgtgcttcactactataagggtgatatcttagat
gaactacctggcttagttgacttcagcgtgttcttgaaactcactcccaagcagaaagac
attgttcacaagttaggagcgtacgagaagttcaaaagaagtgcagtagggactgcagtg
tacgttcatccttgtctttcagaaatttcagaagttaatgctgaggatagagctaacagc
ttgacagataagtcagtagatgccatgatcgattctgtcaatgtgagagatggggtgaag
gccagatttttcattaatatcctgtcacttactaattctgcaggagagaaattacttgct
tttagccaatatatacttcccatgaaatttttggaaaggttgctggttaagatgaagggc
tggcatgtagggaaagagatttttgtgatctctggtgatactagtccagaagacagagaa
ctggcaatggatcaatttaacaactctgctgatgcaaaagttctgttcggttctatcaag
gcatgtggggagggcatctcccttgtgggcgcttcaagagttgtcatcctagatgttcac
ctgaatccatctgttacccgtcaagcaattggccgcgcatttaggcccggacagctgaag
aaagtgtttgtatacaggcttgtagctgccgaatctccagaggaaaagttccatgaaact
gcattcaagaaagaagtcataccaaagctatggtttgaatggactgagcattgcactaca
gaagacttcaaactggatcaaattgatattgatgactgtggagatgaactattggatagt
aaagcaatgcgccaggatatcaaggctttgtatagaaggtaa
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