Phragmites australis (common reed): 133915054
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Entry
133915054 CDS
T10575
Name
(RefSeq) mRNA-decapping enzyme-like protein
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133915054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133915054
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133915054
mRNA degradation factors
5'-3' decay
Decapping complex
133915054
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
mRNA_decap_C
Motif
Other DBs
NCBI-GeneID:
133915054
NCBI-ProteinID:
XP_062214041
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All DBs
Position
4:1406180..1411064
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AA seq
391 aa
AA seq
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MARSRRGGGGGKVTPNLVWDQEGTRVLNLSVLRRLDPAVTDILITAAHVATYSFDEEILE
WSRKPVEGSLFVVKRNTQPRFQLVVMNRLNTENLVEDVLTDFEYQVQVPYVMYRNAAEEI
TGIWFYNPQECEEVAYLFSRIQYAYSRASPKANLSSKSGFEELEAASGPSAVPAAQDTLE
QSTSPTMVPDDVNEFVAAISKADACVDDMIGGTKTVRQNQSLRTVPSPSHESHSASASQP
SAFHNLLPSRTLSVPVRPFDAHISSSTTIQPASLVKPALLAPMASTQTTMANASSSLSVV
PPLHPPLALHQPQSAPLHQPFPLPTVSPSPLYGTPLLQPFPPPKPSPLLTPAAFYGLVLT
RDQVRGALLRLVQNDNFIDMIYLEMVKRPYP
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggagcaggcgcggaggcggcggcgggaaggtgacgccgaacttggtgtgggac
caggagggcacgcgggtgctcaacctgagcgtgctgcggcgcctcgaccccgccgtcacg
gacatcctcatcaccgccgcgcacgtcgcaacctacagctttgacgaggaaatcctggaa
tggagccggaagcctgtcgaggggtcgctcttcgtcgtcaagaggaatacccaacccaga
ttccaattggtcgtcatgaatcgtctaaatacagaaaatcttgtcgaagatgtcttgaca
gattttgagtatcaggtgcaagttccctatgtgatgtaccgtaatgcagcagaagaaatt
accggaatttggttctataacccacaggaatgtgaagaagttgcatatctttttagtagg
atacagtatgcatattctagggcgtctcccaaggcaaatctttcttccaaaagtgggttt
gaagagctggaagcagcgtctgggccatctgctgtacctgctgctcaagatactctagaa
caatcgacatcccctaccatggtaccagatgatgttaacgagtttgtggcagccatttcg
aaggcagatgcatgtgtagatgatatgattggtggaaccaagacagtacgacaaaaccaa
tctttgaggactgttccttctcctagtcatgaatcacatagtgctagtgcatcgcagcct
tccgccttccacaatctgcttccttcacgaactttgtcagttcctgtgaggcccttcgat
gctcatatatctagttctactaccatccaacctgcaagtcttgtaaaaccagcactcctt
gcacccatggcatctacacagacaacaatggctaatgcttcttcttcactgtctgtcgtt
cctccacttcatcctcctcttgctcttcatcagccgcaaagtgctcccttgcaccagccc
ttcccactacccactgtatccccctctccgctatatggcacgccgttacttcaaccattc
ccaccaccaaaaccatcaccattgcttaccccagcagcattttatggcctagtcctgaca
agagaccaagttaggggtgcactgctgaggcttgttcagaatgataatttcatcgatatg
atctacctggagatggtaaagagaccgtacccttga
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