Phragmites australis (common reed): 133925899
Help
Entry
133925899 CDS
T10575
Name
(RefSeq) transcription factor SPEECHLESS-like
KO
K20558
transcription factor SPEECHLESS
Organism
paua Phragmites australis (common reed)
Pathway
paua04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
133925899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
paua03000
]
133925899
Transcription factors [BR:
paua03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
133925899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH-TF_ACT-like_plant
Motif
Other DBs
NCBI-GeneID:
133925899
NCBI-ProteinID:
XP_062227626
LinkDB
All DBs
Position
8:24762667..24765522
Genome browser
AA seq
352 aa
AA seq
DB search
MAEALCDQLFSEVDGELPHHSDNDDLFGIIEAWEDCVTGAGVVLSPRGVDQLAAPDAAAA
KPAANGKRDCDDEGMVQAPKRQRCSPESPEAAETSEDGAAKTTSHITVERNRRKQMNEHL
TVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQQLQSLEAKKQRKAYTENILSPRPPACC
SPRLPLPLKSTPPMSPRPAVPISPRTPPKPGSPYKTCRLPLPLSPPASTYVSPAMTPTHE
PAASTYLLPSLDAIAAKLCAFASNKLQAVPANLPDVKVEFAGANLVVKTVSHRVPGQAVK
VIASLESRSLEILHAKISTVDDTAVNSFTIKIGIECDLSAEELVQEIQHAFS
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcactgtgcgatcagctcttctcggaagtcgacggcgagctcccacaccat
tccgacaacgacgacctcttcggcatcatcgaggcgtgggaggactgcgtgactggcgcc
ggcgttgtgttgagccctcgcggtgtcgatcagctggcagctcctgacgccgcagcggct
aagccggcggcgaatggtaagcgggactgcgacgacgaaggtatggttcaggcgccaaaa
aggcagaggtgctcaccggagtcgccagaggcagcggagacgagcgaggatggcgcagcg
aagacgacatcgcacatcacggtggagcgcaaccggaggaagcagatgaacgagcacctc
accgtgctgcgctcgctcatgccctgtttctacgtcaagcgaggagaccaagcatccatc
ataggaggggtggtggactacatcaaggagctgcagcaacagctccagtcgctggaagcc
aagaagcagcgcaaggcctacaccgagaacatcctcagcccgcggccaccggcgtgttgc
agcccgcgattgccgctgccgctcaagtccacgccaccgatgagcccgcggcccgccgtc
ccgatcagccccaggacaccgccgaagcccggcagcccgtacaagacatgcaggctgcct
ctgcccctctcaccgcctgcctccacctacgtgtccccggcgatgacacccacccacgag
cccgcggcctctacctacctgttgccgtcgctagatgccattgccgccaagctctgcgcc
ttcgcctccaacaagctgcaggcggtgcccgcgaacctccccgacgtgaaggtggagttt
gccggcgccaacctggtggtgaagacggtgtcgcaccgcgtgccggggcaggcggtgaag
gtcatcgcctctctcgagagccggtcgctggagatcctccacgccaagatcagcaccgtc
gacgacacggcggtgaactccttcaccatcaagattggaatcgagtgcgacctcagcgct
gaagagctagtgcaagagattcaacatgcgttctcataa
DBGET
integrated database retrieval system
