Phragmites australis (common reed): 133931234
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Entry
133931234 CDS
T10575
Name
(RefSeq) serine/arginine-rich splicing factor SR45a-like isoform X1
KO
K12897
transformer-2 protein
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133931234
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
paua01009
]
133931234
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133931234
Protein phosphatases and associated proteins [BR:
paua01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133931234
Spliceosome [BR:
paua03041
]
Common components
Common spliceosomal components
SR proteins
133931234
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_5
RBD_DGKtheta
Motif
Other DBs
NCBI-GeneID:
133931234
NCBI-ProteinID:
XP_062234056
LinkDB
All DBs
Position
10:complement(1387608..1392733)
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AA seq
261 aa
AA seq
DB search
MADPPRRRYSRSPSPYRGRPKARSRSQSPARSQSRSPLPDPRSQARSRSRSHEREEEAVN
HGNTLYVTGLSSRVTEREIKDFFSKEGKVVGCHVVLEPHTRVSRGFAFVTMDTVEDAERC
IKYLNDSVMEGRNITVEKSRRGRPRTPTPGSYLGHRYERRDRGRYRRGYGGRDEYYGNGY
RRSPPPMYPPYRDTRDYPPYRDTRDYPPHRDPRDYYESRGGRGYSPPYGGRARRERSISP
YRMPERGYSGSRRAGGGGYDR
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atggccgatcccccgcgcaggaggtactcaaggtccccttctccttacagggggcgccca
aaagcaaggtcaagatcacaatctccagctcgatcccagtctaggtctcctttacctgat
cctagatctcaggcgagatcaagatctagaagccatgaaagggaggaggaggctgtaaac
catggaaatactctgtatgtgactggactctcttctagggtgactgaaagggaaattaaa
gattttttctcgaaggaaggaaaggtggttggttgccatgttgttcttgaaccccataca
cgtgtttctcgcggatttgcctttgtcaccatggacactgttgaagatgcagaacgttgc
atcaagtatcttaacgattctgtaatggaaggccgaaacatcacagttgaaaagtcacgc
cgtggtcgcccaaggacaccaactcctggaagctatcttggtcatcggtatgagcgtaga
gaccgtgggagataccgcaggggctatggtggtcgtgatgagtattatggcaatggctac
cgcagatcaccacctcccatgtaccctccctacagggatactcgggactaccctccctac
agggatactcgggactaccctccccaccgggatccccgagactactatgaaagcaggggt
gggcgggggtactcccccccttatggtggtagggcaagaagggagcgatcaatttcaccg
tatcggatgccagaaaggggctacagcggcagccgccgagcgggtggcggtggctatgac
aggtga
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