Prunus avium (sweet cherry): 110751076
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Entry
110751076 CDS
T05161
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110751076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110751076
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110751076
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110751076
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
110751076
NCBI-ProteinID:
XP_021807192
UniProt:
A0A6P5RX92
LinkDB
All DBs
Position
Unknown
AA seq
2394 aa
AA seq
DB search
MLKFSPTTASQIRFLLQSLNDANSDYVLRELSQFTEYGIEGSILLLQTCLGHLTNYGTDL
KNVALERVLSSVFKYLLDRPNFNTVFCESLRNTEINEGILENFSNALHLSVCEKIAIGLA
LSDSENLDSRTCGKNFCMAEIQKLCENPVALNSSEQIQNTVMFLQRSEGLSKHVDSFMQM
LSLLQLKDDSLFVLTPLLSDELRDANFLSNVGLFHESGENDFDAILAEMEKEMSMGDIMK
ELGYGCTVDSSQCKEILSLFLPLTEFTISKILGMIACTHAGLEDNQNTFSTFRLALGDST
LSDMPMLNTWNIDVLVDTIKQLAPGTNWIRVMENLDHEGFYIPNQEAFSFFMSVYQHVCQ
EPFPLHVICGSVWKNTEGQLSFLRHAVSAPPEVFTFAHSVRQLAYIDAVHGHKLQLGHAN
HAWLCLDLLDVLCLLAERGHALAVRSMLEYPLKHCPEVLLLGMAHINTAYNLLQYEVSFT
VFPMIVKNSMGSGMINHLWHINISLVLRGFVDAHNSDPDSMARILDICEELKILSSVLEM
IPSPFSIRLAALASRKEFIDLEKWLSNNLNTYKDTFFEECVKFLKEIQFGGSQDFSTRPF
QHSGAVSNLYVDTATTFSKVLKAHVGLITSSQLTEEMERLSVTIMDSNPRLQNGGTTESS
TDGYADDIEAEANSYFHQMFSGQLTIDSMVQMLARFKESSVKREQSIFECMIANLFEEYR
FFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQ
FVDRLIEWPQYCNHILQISHLRSTHSELVAFIEQALARISSGHSDSDGSNHASAHHHGPS
QASSGNVELNGSSILHTGQQLSSPLPLQQRHESSLDDRHKASTSSNDIKPLLSSVVQPSV
IPLGDAPSIQKSQSAVSAPAMLSSSSPGFVRPSRGVTSTRFGSALNIETLVAAAEKRETP
IEAPASEVQDKISFIINNISVANVEAKSKEFTEVMKDQYHPWFAEYMVMKRASIEPNFHD
LYLKFLDKVNSKGLNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN
QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLAEI
YSMPNLKMNLKFDIEVLFKNLGVDLKEITPSSLLKDRNRELEGNPDFSNKDVGASQPQMV
AEVKSGIISPLNQVDLPLEVAPSSGSHTHLLPQYGTPLHLPPGTFNEDEKHAALGLSDQI
PSAQGLLQATPSQSPFSASQLPTQIPNIGTHVIINQKLTGLGLQLHFQRVVPIAMDRAIK
EIVSGIVQRSVSIATQTTKELVLKDYAMELDETRIFNAAHLMVASLAGSLAHVTCKEPLR
SSISTQLRNSLQGLNIASDLLEHAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQL
SLRRKRDGVGATFFDTSIYTQGSMGVVPEALRPKPGHLSLSQQRVYEDFVRLPWQNQSSQ
NSHVLPAGTPASGQLNTGYSAGPGSKFDAVSRPLDEAIEPNSALHLSASSIHVGVGDGVS
QQSSENDSVIGSFPSAASAPELQSVESSDAVKESGVSSQPPPSPAVTERLGSNISEPSLN
TRDALDKYQIVAQKLEALVTSDARDVEIQGVIGEVPEIILRCVSRDEAALAVAQKVFKGL
YENASNHIHVGAHLAILTAIRDVCKLVVKELTSWVIYSEEDRKFNKDITVGLIHSELLNL
AEYNVHMAKLIDGGRNRPATEFSISLLQTLVIEESKVISELHNLVDALAKLAAKPGSPES
LQQLVEMVKNPASNVAAPSAINVGKEDKARQSRDKKAPVHSPVNREDFSNVESVEPDPAG
FHEQVSMLFAEWYRICELPGANDAACAHFILQLHQNGLLKGDEMTERFFRVLTELSVAHC
VSSEVMNPGTLQTPQQVQSLSFLAIDIYAKLVFSILKGSNKLFLLTKILTVTVRFIQKDA
EEKKASFNPRPYFRLFVNWLLDLGSLDPVVDGANFQILSAFANAFNALQPVKVPTFSFAW
LELVSHRSFMPKMLAGNGQKGWPLIQRLLVHLFQFMEPFLRNAELGVPVHFLYKGTLRVL
LVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEIS
QSPRILSEVDATLKLKQMKTDVDEYLKTRQQGSSFLTELKQKLLLPSNDVALAGTRYNVP
LINSLVLYVGMQAIQQLQSRTPHAQSTQSVPFAVFLVGAALDIFQTLIVDLDTEGRYLFL
NAIANQLRYPNTHTHYFSFIVLYLFAESNQHEIIQEQITRVLLERLIVNRPHPWGLLITF
IELIKNPRYQFWNRAFIRCAPEIEKLFESVSRSCGGPKPVDESMVSGWVSESAH
NT seq
7185 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagttttcgccgaccaccgcgagccagattcgctttctcctccaaagcctcaac
gatgccaactctgactatgtgctccgagagctctctcagtttactgaatatggaattgag
ggaagcattttgctgctccagacctgtctgggtcatctcactaattacggaacagacttg
aagaatgtggcactggaacgggttctttcctcagtttttaaatatcttcttgacagacct
aatttcaatacagtgttttgtgagtccctaagaaatacagagatcaatgaaggaattcta
gagaatttctcgaatgcattacacctgtctgtatgtgagaagattgccattggtcttgcg
ttgtcagattctgaaaacctagacagcaggacatgtggcaagaacttctgtatggctgag
atccagaagttgtgtgaaaatcctgttgcgctgaattcttctgagcaaattcagaacact
gttatgttcctccagcggtctgagggcctttccaagcatgtggattcctttatgcagatg
ttatctttattacagctgaaagatgacagtttgtttgttctaactccattgctttcagat
gagcttcgtgatgccaattttttgagcaatgtgggtttgttccatgaaagtggagaaaat
gattttgatgctattttagcagaaatggagaaggaaatgagcatgggagatataatgaag
gaattaggttatggatgcacagttgattcatctcagtgtaaagagattttatcccttttc
ttaccactcactgagtttaccatctcaaaaatacttggcatgattgcctgtactcacgct
ggtcttgaggacaatcagaatacattttcaaccttccggttggcgcttggtgacagcact
ttgtctgatatgcctatgttgaacacctggaatattgatgtccttgtagatacaatcaag
caacttgctcccggcaccaactggatacgggttatggaaaatttggatcatgagggattt
tacattcctaatcaggaggctttctcttttttcatgtctgtatatcagcatgtgtgtcag
gagccctttcccctccatgtcatctgtgggtctgtctggaagaataccgagggtcagcta
tcctttcttagacatgctgtatcagcaccacctgaagtgtttacctttgctcattctgtt
aggcagctggcctatattgatgctgtgcatggccataagcttcaacttggacatgcaaat
catgcgtggttgtgtcttgaccttttggatgtactgtgtctactagctgagaggggtcat
gctcttgcagttcgatcgatgcttgagtatcctcttaaacactgtcctgaagtcctgctt
cttgggatggcacatataaatactgcatacaacctgctgcaatatgaagtgtcttttacc
gttttccccatgatagtaaaaaattccatgggcagtggcatgattaaccacctctggcat
attaacatctcgctggtgctgcggggattcgttgatgctcacaatagtgatccagatagc
atggctagaatattggatatctgtgaagagctaaagattctgtcatctgtcttagagatg
attccttccccttttagtatcagactggcggctcttgcttccagaaaagagtttatagac
cttgagaagtggttgagtaataatttgaatacatataaagatactttctttgaggaatgc
gtcaagttcttgaaggagattcaatttggtggatcacaggatttttccaccagacctttc
caacattctggtgctgtgtcaaatctttatgtggacactgctactacattctcgaaggtt
cttaaagctcatgttggcttgattacctctagccaacttactgaggagatggaaagattg
tctgtaacaattatggattctaatccaaggctgcagaatggtggcactacagagtcatca
actgatggatatgcagatgatattgaagcggaagcaaactcttacttccatcaaatgttt
tctggtcagttgacaattgattcaatggtccaaatgcttgcccgattcaaggaatcttct
gtaaaaagggaacagtcaatttttgagtgcatgattgctaatctgtttgaagagtacaga
ttcttccccaagtatcctgaaagacagctcaaaattgctgcagttctctttggttctgtc
atcaagcaccagcttgtaactcatctgactcttgggattgctctgcgtggtgttttagat
gcattacgcaagcctgcggattcaaaaatgtttgtgtttggaactaaggctttggagcag
tttgtggatcgtctgattgagtggccgcagtattgcaatcacattcttcaaatatcacat
ctgcgtagtactcattcagagctcgtggctttcattgaacaggctcttgctaggatttca
tcaggccattcagactcagatggaagcaaccatgcttctgctcatcaccacggtcccagt
caagcttcctcaggaaatgtggagttaaatggttcgagcatcttacatactgggcagcaa
ctatcatctcctctcccgcttcaacagagacatgaaagttctcttgatgaccgtcataaa
gcctctacttcatccaatgacataaagccacttttatcttctgttgtgcaaccttcggtt
attcctttaggcgatgctcctagtattcagaagtcacaaagtgcagtcagtgctccggca
atgttgtcttcttcttcccctggtttcgttcgtccttcacgaggagttacttctacaagg
tttggttctgctttgaacatcgaaacattagttgctgctgctgagaaaagagaaactccc
attgaggctccagcatcagaggttcaggacaagatatcatttataattaataatatttca
gttgctaatgttgaagctaagtcaaaggagtttacagaagtaatgaaagatcaataccat
ccttggtttgcggagtatatggttatgaaaagggcaagcattgagccgaattttcacgac
ttgtacctgaaatttctggacaaagttaattctaagggtttgaataaggagattgttcaa
gctacttatgagaactgcaaggttcttcttggatcagagcttataaaatcaagctcagaa
gagcgctcattgttaaaaaatttagggagctggcttgggaagcttacaattggaaggaat
caagtcttaagggctcgtgaaatagatcccaagtctttaattatagaggcatatgagaaa
gggttgatgattgcagttataccctttacttcaaagattctggagccatgccaaagtagc
ctggcataccaaccaccaaatccctggacaatgggtattcttggattacttgctgagatc
tattcaatgccaaacttaaagatgaacctgaagtttgacatagaggttctattcaagaat
cttggtgtggatttgaaggagataacaccaagttctcttctcaaggatcgcaacagagaa
cttgaagggaatcctgatttctctaacaaagatgttggggcatcccaaccacagatggtt
gctgaagtgaaatctggaatcatatctccactaaatcaagttgatctaccacttgaggtt
gcgccatcttctgggagccatacacatctattacctcagtatggcactcctcttcatctt
ccacctggtacctttaacgaggatgagaagcatgctgctttagggttgtctgatcagatt
ccttctgctcaaggactgttacaagctaccccgtcacaatcaccattttctgcgagtcag
cttcccacacaaatacctaatatcggaactcatgtaatcattaaccagaagctaactggc
ttgggattgcaactgcattttcagagagtggttccaatcgcaatggacagagctatcaaa
gagatagtatctggtattgttcagcgcagtgtttctatagctacccagaccactaaagag
cttgttttaaaggattatgccatggaattagatgagacgagaatatttaatgcagctcac
ttgatggttgcaagtttggcaggaagtctagctcatgtgacatgcaaggaacctttgcgc
agttcaatatcaactcagctcaggaattcccttcagggattaaatattgccagtgatctt
ctagaacatgctgtacaacttgttactaatgataatctggatcttggctgtgcagttatt
gaacaggctgcgactgataaggccatacaaacaattgacggggaaatagctcaacagctc
tcattaagaaggaagagggatggtgttggtgcaaccttttttgatactagcatctatact
caaggttccatgggcgttgtgccagaggcccttcgccctaaacctggccatttgtccctt
tctcaacagcgagtttatgaggactttgttcggcttccctggcagaaccagtctagccag
aactcgcatgttcttcctgctggtactccagcatcaggacaacttaacacaggctactca
gcaggccctggaagcaaatttgatgcagtttctcgtccgctggatgaggcgattgaaccc
aattcagctctgcatcttagtgcttcctctattcatgttggggtgggtgatggtgtttcc
cagcagagttctgaaaatgattctgtcattggttcatttccttctgctgcttctgcccca
gagctacaatcagtagagtcgtctgatgctgtaaaggaatctggagtttcttcacagcca
ccaccttcacctgctgtaactgagcgtcttggaagtaacatttcagaaccttctctcaac
acgagagatgctttggataaataccagattgtggcacaaaagttggaagctttggtaact
agtgatgctagagatgtagaaattcagggagtcattggtgaagttcctgagattatactc
agatgtgttagtcgagatgaggctgccttggctgtggctcaaaaggttttcaagggttta
tacgagaatgcatccaaccatattcatgtcggtgctcatcttgcaatcctgactgccatt
cgtgatgtttgcaagcttgttgttaaggagctcactagttgggttatttattccgaggag
gaccggaagtttaacaaagatattactgttggccttattcacagtgaattgctaaacctt
gcagagtacaatgttcatatggccaaacttattgacgggggcaggaataggcctgcaact
gagttttccatttcccttctccaaactttggtgattgaagaatctaaagttatatcagaa
cttcataatcttgttgatgctttggcaaagctcgctgcaaagcctggatctcctgagtca
ctacagcagctggttgaaatggtgaagaatcctgcttctaatgtggctgctccatctgct
attaatgttggaaaggaggacaaggccagacaatctagagataaaaaggctcctgttcac
tctcctgtgaacagggaagactttagtaatgtggagtctgtggaacctgatcctgctggt
ttccatgagcaggtgtcaatgctgtttgcagagtggtaccggatttgtgaacttcctggt
gcaaatgatgcagcttgtgcccatttcatcttacagttgcatcaaaatggtctgctgaag
ggggatgaaatgacagagcggtttttccgcgtcctcacagagctttctgttgcacattgc
gtgtcttctgaggtgatgaatccaggcacattgcaaacaccacaacaagtgcagagtctc
tccttccttgccattgatatctatgctaaacttgtcttctcaattttgaagggatcgaat
aaactatttctcttgactaagattttaacagtcacagtgagattcattcaaaaggatgca
gaggaaaagaaagcatctttcaatccaagaccatattttagattgtttgttaactggctg
ctggaccttggttctctggatcctgtggttgatggtgctaactttcagatcttgtcagca
tttgcaaatgcatttaatgctttgcagcctgttaaagttcctacattcagctttgcatgg
ctcgagttggtgagtcataggagttttatgccaaaaatgctcgctgggaatggccagaag
ggctggccccttatccaacgtttgctggtacacttgtttcaattcatggagccatttttg
aggaacgctgaactaggagttccggttcatttcctgtataaaggcacacttagggtgctg
ctagtgctacttcatgatttcccagaatttctctgtgactatcactttaccttctgtgat
gttattcctccaagctgcattcaaatgcgaaatattatcctcagtgcatttccccgtaat
atgaggctgccggatccatctactccgaacttaaagattgatttgcttgctgaaatcagt
cagtctccacgtattctttccgaggttgatgcaactctaaaattgaagcagatgaaaact
gatgtggacgagtatctcaagacaaggcaacaaggttcttcatttctgactgaactgaag
caaaaattgctacttccatcaaacgatgttgccttagctggtactcgttacaatgtaccc
ctcatcaactcccttgtgctttatgttgggatgcaggccatccagcagcttcagtctaga
acacctcatgcacagtctacccaaagtgttccattcgctgtctttttggtgggtgctgct
ttggatattttccagactctgatagtggacctagatactgaagggcgttaccttttccta
aatgcgattgcaaaccaactgcgctatccaaacacccatacccattacttttcgttcatt
gttctttacttgtttgccgaatcaaaccagcatgaaattatccaggagcaaatcacaaga
gtactgttggaacgtctgattgttaatcggccacatccatggggtcttctgattaccttc
attgagcttatcaagaaccctagataccagttctggaaccgagctttcatacggtgtgcg
ccagagattgaaaaactctttgaatctgtctcaagatcttgcggcggtccaaaacctgtt
gatgaaagcatggtctcaggttgggtatctgagagtgcacactga
DBGET
integrated database retrieval system
