Paenibacillus sp. YPG26: LDO05_16135
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Entry
LDO05_16135 CDS
T11186
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
payg Paenibacillus sp. YPG26
Pathway
payg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
payg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LDO05_16135 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
payg03021
]
LDO05_16135 (rpoB)
03400 DNA repair and recombination proteins [BR:
payg03400
]
LDO05_16135 (rpoB)
Enzymes [BR:
payg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LDO05_16135 (rpoB)
Transcription machinery [BR:
payg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LDO05_16135 (rpoB)
DNA repair and recombination proteins [BR:
payg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LDO05_16135 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
USB32763
LinkDB
All DBs
Position
complement(3374728..3378273)
Genome browser
AA seq
1181 aa
AA seq
DB search
MAGHLVQYGRRTRRSYARINEVLEVPNLIEIQQKSYEWFLEEGLREMFQDISPIQDFTGN
LILEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTE
TGTFIINGAERVIVSQLVRSPSVYFNTKIDKNGKKAYTATVIPNRGAWLELETDAKDIIY
VRIDRTRKIPVTVLLRALGFGTDAEILDLLGNDEYIRNTLDKDNTDSTEKALIEIYERLR
PGEPPTLDNARSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAESLIDTSTGE
IIAEAGQMVDRRLLDEILKNLEEGVGFKTYHVANGVLETEDVPLQTIDVFSPIEDGKVVK
VIANRDIDKSVKNITPADIISSISYFINLLHGIGSTDDIDHLGNRRLRSVGELLQNQFRI
GLSRMERVVRERMSIQDANVITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH
KRRLSALGPGGLTRERAGMEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYGF
IEAPYRWVDPKTGKVTEQISYLTADEEDNYVIAQANVELNEDGSFKEEQVIVRYNKQSDN
ILTMPSDRVDYMDISPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVG
TGMEHKSAKDSGVCIVAKYDGIIERSAANEIWLRRVETVEGKEVKGDLVKYKLHKFMRSN
QGTCINQRPIVKRGDIVKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLSE
KLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRVGAEISAG
DILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKVFTRENGD
ELPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFMPDGTPVQVVLNP
LGVPSRMNIGQVLEIHLGMAAMKLGIHVATPVFDGANEYDVFDTMEEAGMQRNGKTVLYD
GRTGDRFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIKELQSLG
MDVKILSENEEEIEMREIDDEEDAAGDKLSLNLEGSEVGVE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatcttgttcaatatggtcgacgcactcggcgtagttatgcgcgaattaac
gaggtactcgaggttccgaacctgattgagatccaacaaaaatcatacgagtggtttttg
gaggaaggtcttcgggaaatgtttcaggacatctcgccgatacaggattttaccggcaat
ttgattctggaatttatcgactacagtcttggtgaaccaaagtatacggtagacgatgcg
aaagagcgtgacgttacgtatgctgcaccacttagagtaaaagtccggctcattaataaa
gaaaccggcgaagtcaaagagcaggaagtgttcatgggggatttcccgctgatgacggaa
accggcaccttcattatcaatggtgcagaacgggttattgtcagccagttggtccgctcc
cctagcgtctatttcaataccaaaatagataagaacggcaagaaggcctacactgcgacg
gtaattcctaaccgtggtgcatggcttgagcttgagacggatgctaaggacattatttat
gtccggatcgaccgtactcgtaaaatacctgtaactgtattgcttcgcgcactcggtttt
ggtacggatgctgagattctagaccttctcggtaacgatgaatatatccgcaatacgctg
gacaaagacaatacggactccacggagaaagcgctcattgaaatttatgaacgtcttcgt
ccgggcgagcctcctacacttgataatgcaagaagtttgctggttgcgcgtttctttgat
ccgaagcgttatgatctggcgaacgtaggccgctacaaaatcaacaaaaagcttcatatt
aagaaccgtctctttaaccaacgccttgcagagtccctgattgatacatcaacaggtgag
attattgcagaagcgggtcaaatggttgatcgccgtttgctggatgagattcttaagaac
ctggaagagggagttggcttcaagacttaccatgtagctaatggtgtgcttgaaactgag
gatgtgcctctacagactattgatgtattctctccaattgaagatggtaaagttgttaaa
gtcatcgctaaccgcgatatcgataaatcagttaagaacattacgcctgctgatattatc
tcctcaatcagttatttcattaacctgctgcatggaatcggaagcacggatgatatcgac
catctgggtaaccgccgtctacgctctgttggtgagttgctgcagaaccagttccgtatc
ggtctatcccgtatggagcgcgtagttcgtgagagaatgtccatccaggatgctaatgta
attacaccgcaggctctaatcaacattcgtccggttattgcctcaatcaaagagttcttc
ggaagctcccagctgtcccagttcatggaccagacgaacccgctggcggaacttacgcat
aagcgccgtctgtctgcactcggacctggtggtttgacccgggaacgtgcgggcatggaa
gtgcgtgacgttcaccactctcactatggccgtatgtgtccgattgagacaccggaagga
ccgaacatcggtctgatcaactccttgtccacatttgcccgtatcaatgagtatggcttc
attgaagcgccatatcgttgggtagatcctaagacaggtaaagttacggagcaaatttct
tacttgactgcggatgaggaagataactacgttatcgcgcaggccaatgtcgagctcaat
gaagacggcagctttaaggaagaacaagtcattgttcgttataacaagcagtccgataac
attttgactatgcctagtgaccgcgttgactacatggatatctctccgaagcaggtagtg
tctgttgctacagcgctgattcctttcttggagaacgatgactccaaccgcgcactcatg
ggatcgaacatgcagcggcaggctgtaccacttctaattcctaaggcacctcttgtaggg
acgggaatggagcacaagtctgcgaaagactctggtgtatgtatagttgctaagtatgac
gggatcattgagcgttcggcagctaatgaaatttggctgcgccgcgttgagacggtcgaa
ggcaaggaagtcaaaggcgaccttgttaaatataaattacacaaatttatgcgttcgaac
caagggacatgcattaaccagcgtccaatcgtcaagagaggcgatatcgtcaagaagggt
gatatccttgctgacggcccttccacagagatgggtgaattggcactgggccgcaatgtg
gtcgtggccttcatgacttgggaaggttacaactatgaggatgcgattctccttagtgag
aagctcgtcaaagaagatgtatatacatcgatccacattgaggagtatgaatccgaagcg
cgtgacacgaagcttggaccggaagaaattacacgcgatattcctaacgtaggtgaagaa
gctcttagaaacctcgacgagcgcggaattattcgtgtaggtgctgagatcagtgccggt
gatattctggttggtaaagttacaccaaagggtgttactgaactgactgcggaagagcgc
ttgcttcatgcgattttcggtgagaaggctcgtgaagttcgtgatacttccctgcgtgta
ccgcacggtactgacggtatcgttgtggatgttaaggtcttcactcgtgagaacggggat
gaactgccgccaggtgttaatcaactggttcgtgtatatattgcccaaaaacgtaagatt
tccgaaggtgacaaaatggccggacgacatggtaacaagggtgtcgtagcgcgtattttg
ccagaggaagatatgccgttcatgcctgacggaacaccagtgcaggttgttcttaacccg
ctgggggtaccttcacggatgaacatcgggcaggtgcttgagatccacctgggtatggcc
gcaatgaagctcggtatccacgtggcaacaccagtctttgatggagcgaacgagtacgat
gtgttcgataccatggaagaggcaggtatgcagcgtaatggtaaaaccgttctgtatgat
ggccgtacgggtgacagatttgaacgtgaagttacagtaggcgtcatgcacatgatcaag
ctcgctcacatggttgacgataagatccatgcccgctctacaggtccttactcactcgtt
acccaacagcctctgggtggtaaagctcagttcggtggacagcgtttcggggagatggag
gtatgggcgcttgaggcatatggtgcggcgtacactctccaggagattctcacagttaaa
tccgatgacgtggtgggacgggttaagacctacgaatccattgtcaaaggcgagaatgtg
ccggagccaggcgttcctgagtccttcaaagtattgatcaaagagcttcaaagcttgggt
atggacgtgaaaatcctgagtgagaatgaagaagagatcgaaatgagagaaatagacgat
gaagaggatgctgcaggcgacaagcttagcttgaacctggagggctctgaagtcggcgta
gaatag
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integrated database retrieval system
