Paenibacillus barcinonensis: HUB98_13715
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Entry
HUB98_13715 CDS
T06922
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pbac
Paenibacillus barcinonensis
Pathway
pbac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HUB98_13715 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbac03021
]
HUB98_13715 (rpoB)
03400 DNA repair and recombination proteins [BR:
pbac03400
]
HUB98_13715 (rpoB)
Enzymes [BR:
pbac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HUB98_13715 (rpoB)
Transcription machinery [BR:
pbac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HUB98_13715 (rpoB)
DNA repair and recombination proteins [BR:
pbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HUB98_13715 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QKS57258
UniProt:
A0A2V4UUB9
LinkDB
All DBs
Position
complement(2962986..2966531)
Genome browser
AA seq
1181 aa
AA seq
DB search
MAGHLVQYGRRTRRSYARINEILEVPNLIEIQQKSYDWFLEEGLREMFQDISPIQDFTGN
LILEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTS
TGTFIINGAERVIVSQLVRSPSVYFSTKVDKNAKKTYTATVIPNRGAWLELEMDAKDVVY
VRIDRTRKIPVTVLLRSLGFGTDAEILDLLGNDEYIRNTLDKDNTDSTEKALIEIYERLR
PGEPPTLDNAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAESLIDAETGE
IIAEAGQMVDRRLLDEIMPYLEKSVGFRTYHVGNGVLDANDIPMQTIDVFSPIEDGKVVK
LIANGDIDKSVKNITPADIISSISYFLNLLHGIGSTDDIDHLGNRRLRSVGELLQNQFRI
GLSRMERVVRERMSIQDANVITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLGELTH
KRRLSALGPGGLTRERAGMEVRDVHPSHYGRMCPIETPEGPNIGLINSLSTFARVNEYGF
IEAPYRWVDPKTGVVTEQIDYLTADEEDNYVIAQANAKLNEDSTFAEDAIIVRYNKQSDN
ILTMPSERVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVG
TGMEHKAAKDSGVCIVADYDGIIERSSANEIWLRRIEEVDGQEVKGDIVKYKLHKFMRSN
QGTCINQRPIVKRGAAVKAGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLSE
KLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRIGAEIAAG
DILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKVFTRENGD
ELPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVQIVLNP
LGVPSRMNIGQVLEVHLGMAAMQLGIHVATPVFDGAKEYDVFDTMEEAGMQRNGKTVLYD
GRTGEEFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIKELQSLG
MDVKILSEDEQEIEMKEMDDEDDAASDKLSLNLEGTEVGAE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatcttgttcaatatggtcgacgcactcggcgcagttatgcacgaattaac
gagatactcgaagttccgaacctgattgaaatccaacaaaaatcgtatgactggtttttg
gaggaagggttgcgcgaaatgttccaggatatctcgccgatccaggatttcacaggcaac
ttgattttggaatttatcgattacagtctcggggaaccgaagtatacagtagacgacgca
aaagagcgtgacgttacttatgcagcaccgcttcgggtcaaagtccggctcattaataag
gaaaccggagaagtcaaagagcaggaagtattcatgggagatttcccgctgatgaccagc
accggaacattcattattaatggtgcggaacgggttattgtcagccagttggttcgctct
cctagcgtttacttcagcacaaaagtagataagaacgccaaaaaaacgtataccgctaca
gtaattcctaaccgcggcgcatggcttgagctggagatggatgcgaaggacgtcgtttac
gtccggatcgaccgtacgcgtaaaataccggttacggttctcctgcgttcccttggtttt
ggcacagacgctgagattctggatttgctcggtaatgacgaatatatccgtaacacgctg
gacaaagacaacacggactctacggagaaagccctcatcgagatttatgagcgtcttcgt
ccgggcgagcctccaacgttggataatgcgaagagcttgctcgttgcacgattctttgat
ccaaaacgttatgacctcgcaaacgtaggtcgttacaaaatcaacaaaaagctgcacatc
aaaaaccgtttgtttaaccagcgtttggctgagtctctcatcgacgctgaaacaggcgag
atcattgcagaagcaggtcagatggttgaccgtcgtttgctcgacgaaatcatgccttac
ctggagaaaagcgttggcttccgcacatatcacgtggggaacggcgttctggatgccaat
gatatcccgatgcaaacgattgacgtattttcaccaattgaagacggtaaagtggttaag
ctgattgccaatggtgacattgacaagtccgtgaaaaatatcactccagccgatatcatc
tcttccatcagttacttcctgaacttgctgcatggcattggcagcacggatgatatcgac
cacctgggtaaccgtcgtttgcgttccgtgggtgagctcttgcagaaccagttccgtatc
ggtttgtcccgtatggagcgtgtggttcgtgagagaatgtccattcaggatgcaaatgtg
attacaccacaggctttgatcaacatacgtccggtcattgcatccattaaagagttcttc
ggtagctcccaattgtcacagtttatggatcaaacgaacccgctgggtgagttgacgcat
aaacgtcgtctgtccgcactcggaccgggcggtttgacacgtgaacgcgccggcatggaa
gtccgtgacgtgcatccatcccactatggacggatgtgtccgatcgagacaccggaggga
ccaaacatcggtttgatcaactccctgtcgacttttgcacgcgtaaacgaatatggcttt
atcgaagctccttatcgttgggttgatccgaagactggtgtcgtaaccgagcagattgat
tacctgacagcagacgaagaggacaactatgttatcgctcaagcgaatgcaaagctgaac
gaagatagcacctttgcagaagacgcgatcattgtacgttacaacaaacagtcggataac
atccttacgatgccgagtgaacgagtagactacatggacgtatctcctaagcaggttgta
tcggtcgctacagcactcattccgttccttgagaacgatgactccaaccgtgccctcatg
ggatcaaacatgcaacgtcaagcggttcctttgttgattcctaaagctccgctcgtagga
acgggtatggaacacaaagcagcgaaagactccggtgtatgtattgttgccgattatgac
ggaattattgagcgttcttctgcgaacgagatctggctccgtcgtattgaagaggtagat
ggtcaggaagtcaaaggcgatatcgttaaatataaattacacaaatttatgcgttcgaac
caaggaacatgcatcaaccaacgtccgatcgtgaaaagaggcgctgctgtcaaagctggc
gatatccttgctgacggtccatcgacggaaatgggtgaacttgcacttggacgtaacgtt
gtagttgccttcatgacatgggaaggttacaactacgaggatgcgatcctgctcagtgaa
aaactcgtgaaggaagatgtttacacatccatccacatcgaggaatatgagtcggaagct
cgggataccaagctcggacctgaagagatcacacgcgatatccctaacgttggggaagaa
gcgctgcgtaatctggatgagcgcggtattatccgcatcggtgccgaaattgcagctggc
gacattctcgttggtaaagttacaccaaaaggtgttaccgagctgactgcagaagaacgt
ctcttgcatgctatctttggtgagaaagcacgtgaagtacgtgatacttccttgcgtgtg
cctcacggtacagatggtatcgtagtcgatgtaaaagtatttacccgtgaaaacggagat
gaactgccaccaggtgtgaaccagctcgttcgtgtttatattgcccaaaaacggaaaatt
tccgagggtgataaaatggcgggccgtcacggtaacaaaggggtcgtggcccgcatcttg
ccggaagaagatatgcctttcctgccagatggcacaccagttcaaattgttcttaacccg
ctgggcgtaccttcccgtatgaacatcggtcaagtgctcgaagttcacttgggtatggca
gcaatgcagctaggtatccacgtagcaacacctgtattcgacggagcgaaggagtatgac
gtcttcgatacgatggaagaggcaggtatgcagcgtaacggtaaaaccgtgctgtatgat
ggtcgtacgggtgaagagtttgaacgtgaagttaccgttggtgtcatgcacatgatcaaa
ctggcacacatggttgacgataaaatccatgcccgttctacaggtccttactcacttgtt
acgcaacagccgttgggtggtaaagcccaattcggtggacagcgtttcggggagatggag
gtttgggcgcttgaggcttacggtgccgcttatacactgcaagaaatcttgactgttaaa
tccgatgacgttgtgggtcgggtgaaaacgtacgagtccattgtcaaaggcgagaacgtg
ccggagccaggtgttcctgagtcgttcaaagtattgattaaagagctgcaaagcttgggt
atggacgttaagattttgagcgaagatgagcaagagattgaaatgaaagaaatggacgat
gaagatgacgctgcgagcgataagctcagcctcaaccttgagggtacagaggtcggagcg
gaataa
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