Pogonomyrmex barbatus (red harvester ant): 105427123
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Entry
105427123 CDS
T04903
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03013
Nucleocytoplasmic transport
pbar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105427123
09122 Translation
03013 Nucleocytoplasmic transport
105427123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105427123
03041 Spliceosome [BR:
pbar03041
]
105427123
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
105427123
Spliceosome [BR:
pbar03041
]
Complex C
Other components
EJC/TREX
105427123
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105427123
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
105427123
NCBI-ProteinID:
XP_011637035
UniProt:
A0A6I9W514
LinkDB
All DBs
Position
Unknown
AA seq
1529 aa
AA seq
DB search
MASKVWHTELWKSWDKHGKNDFLKLIKHKFKEGNTPEWRRGLYELISNGIHGNIKKDSVI
QTLGELMSFDVSILLAIVDIFTLIDAEAHNEERNNFYYIVKESEKFLTDRILKERLEIET
LQDVGTLKNKNFQTKFIKVKTKLYYKQRKFNLFREESEGYSKLIVELNQEHPDSDVASTL
EIVKSLIGYFNLDPNRVLDILLETFENRPQDDALFIPLIRSYMSDQEVLCEVLGFKYCST
INATPFSLQKVTALMLQHGVIKLDDILPWLMPDDKTIISDHEQVMKQAKEYVRKLSVIST
KDKEDVVEEKDTTQDKYASNQKFGLCEALLEIGAWEVAQNLFNRLPDYCLTDQRPIALAL
CKMIQALIEPVYRKHCIVSPKLPGRKVPPLKSSLAPPSLCDLEDIHDYLLPMLIVLGPNL
HHDPILMYKVMRLCYAAIKHCPLDANKQLLDKNCSLYYDVLTILDVALLPSLSFMDCNCC
VAEELWNILKYYPYQNRYCLYARWKNETPLQHAALLRKRADAQKKIKSIMKRVSKETIKP
VGRSIGKLTHSSPGVLFDYVLVQIQLYDNLIGPVVDSLKYLTNISYDVLGYCLVEALAGA
DRDRFKHDGTSISLWLQSLASFCGAIFKKYNIELTGLLQYVANQLKAQKSLDLLILKEIV
QKMAGIEAAEEMTSDQLDAMAGGDLLKNEAGYFSQVRNTKKSSQRLKEALAEQDLAVALC
LLMAQQKHCVVYRETDKSHLKLVGKLYDQCQDTLVQFGTFLGSTMTVDEYVERLPSIHSM
LQDNHIHADVAFFLARPMFAHAINIKYDALRKADPNYKKMSTAMKQMKYAEAAQTVMAPV
AQSVRPLHPLKVWEDISPQFLVTFWSLSMYDLYVPVESYQREISKLKQLAAQTADSKDMN
VSKGKKEQERYTTLIEKLQDEKKKQEEHVEKVFAYLRQEKDTWFLSRSAKSAKNETITQF
LQLCLFPRCTFTTVDAMYCAKFVHTIHSLKTANFSTLLCYDRLFCDITYSVTSCTENEAN
RYGRFLCAMLETVMRWHSEKAIFDKECSNYPGFVTKFRVSNQFSEANDMVGFENYRHVCH
KWHYKITKAIVVCLDSKDYVQIRNSLIILIKILPHFPVLAKLSQILERKVEKVREEERGQ
RQDLHVLATSYSGQLKAKTPSMIRESDFHHVGDKAGKTQDATNNETNEKVSNGVTVKENN
NGDTRPEKENKDQREKRSSSSQAHHENSEKFRKKEDNKDISEVSKEKYIKKEEVKDDEGL
DKKDRKYYKDEHYYSSAVDNLDRDLSSVSNSSASTGPLQEGPERVSDVKRRKVESAPKQE
GRRADAVLDKKERSSKGKTRDEQKELRREKKQGRKRDRTEESIVTTEQKRRKDDERAKNT
HQNGDIPEHREKHHTVRKNLHMQRIVLMNAKDARVVINTEEVQIRNEDDVQQRKGARLNI
FYAMFDVACNKRRIRNKAKKIVSNLYIICFNIQFYKINYLSVRYFFVCVLIQSFSKSKRN
HNLRERYVRNVICKINNYMCNNDNKYIDK
NT seq
4590 nt
NT seq
+upstream
nt +downstream
nt
atggccagcaaagtatggcatacagaattgtggaagtcttgggataagcacggaaaaaac
gatttcctcaagctaatcaagcacaaatttaaggaaggcaacacaccagaatggagacgt
ggattatacgaattaatatcgaatggaatccatgggaacataaaaaaggacagtgtaatt
cagacattaggtgaactcatgagttttgatgtttccatactattggcaatagtagatata
tttactttaattgatgcagaagctcataatgaagaaagaaacaacttttattatatagtc
aaagaatctgagaagtttttaaccgatagaatattgaaagaacgtttagaaattgaaact
ttacaagatgtagggacactgaaaaacaaaaattttcaaactaagtttataaaagtaaaa
acgaaattatattataagcaaaggaaatttaatttatttcgtgaagaaagtgagggttat
tctaagctcattgtagaattaaatcaagaacatccagacagtgatgtggcctcgacattg
gaaatcgttaagtcccttatcggttattttaatcttgatcctaatagggtactcgatatc
ttattagaaacttttgaaaatcgaccacaagatgatgctctatttattcccttaatacgt
tcatatatgagcgatcaggaagtactttgtgaagtgttagggtttaaatattgttctact
ataaacgctacgccattctcactacaaaaggtcaccgcgcttatgctgcaacatggcgta
atcaaattggatgacatattaccttggctaatgccagacgataaaactatcatatcagat
catgagcaggtgatgaagcaggctaaggaatatgtgcgaaaattaagcgtgatctcaacg
aaagacaaggaggatgttgtggaggaaaaggatactacacaagacaagtatgcaagtaat
caaaaatttggattatgtgaagctcttctggaaattggagcttgggaagtggcgcaaaat
ttattcaatcgtttgccagactactgtcttacggatcaacgtcctatagctctagcattg
tgcaaaatgattcaggctcttatcgaacctgtatacagaaaacactgcattgtttctcca
aaattgccgggtcgtaaagtgcctccattgaagagttctctcgcgccaccatcattatgc
gatctggaagacattcatgattacttattgccaatgctgatcgtacttggaccgaatcta
catcatgatcctattttaatgtacaaggtgatgagattatgttacgccgctatcaagcac
tgtccactcgatgcgaacaaacaattattggataagaactgtagtctctactatgacgta
ctgacgatactggacgtagcgctgttaccctcgctttccttcatggattgcaattgttgt
gttgccgaggaactatggaacatccttaaatattatccttatcagaatcgctattgtttg
tatgcgcgctggaagaacgaaacgccgttgcagcacgccgcgctattgcggaaacgagca
gatgctcagaagaaaataaaatcgattatgaaacgcgtaagcaaggagacaattaaaccg
gtcggtcgatcgataggcaagcttacgcattcttctccgggtgtactatttgattacgtc
ctcgtacagattcagttatatgataacctaataggacctgtcgtggattccttgaaatat
ttgacaaacatctcgtacgatgtgttaggatattgtcttgtagaagcattagcaggtgcc
gatcgagatagatttaaacacgatggtactagtatatctttatggttgcaatctctagct
tccttttgcggagcgatatttaagaaatataacatcgaattaacagggttgttacaatat
gtagcaaatcaacttaaagctcaaaagagcctagatctattaatattaaaagaaattgta
caaaaaatggctggtatcgaagcagccgaagaaatgacgtctgatcaactggacgctatg
gcgggtggagatcttttgaagaacgaggccggttactttagtcaagtccgcaatacaaaa
aaatcctcgcaacgtttgaaggaagctcttgccgagcaagatcttgcggttgctctgtgt
ctattaatggcacagcagaaacattgcgtcgtttatagagaaacagataaatctcatcta
aaactcgttggcaaattgtatgatcaatgtcaagatacattggtacaattcgggactttc
ctgggctcgactatgacggtagatgagtatgtagaacgattaccctctatccactctatg
cttcaggacaatcacatacacgcggatgtcgcatttttcttggcgcggccaatgttcgcg
catgccataaatataaaatatgacgctcttcgtaaagctgatccaaattacaagaaaatg
tctacggctatgaagcaaatgaaatacgcggaagctgcgcaaaccgttatggcacctgtc
gctcagtccgtcagaccgttgcatcctttaaaagtttgggaagacatatcgccgcaattt
ttagtcactttttggtctctatcgatgtatgatttgtatgtgccagtggagagctatcaa
agagaaattagcaaattaaaacaacttgcagcgcaaaccgccgattccaaagatatgaat
gttagtaaaggaaagaaggaacaagaaagatataccactcttattgagaaattgcaagat
gaaaagaaaaagcaagaggaacatgtcgaaaaagtttttgcgtacctgagacaagaaaag
gatacatggtttttgtcgcgaagtgctaaatctgcgaaaaatgagacgataacgcaattc
ctacagttgtgcctatttccgcggtgtacattcacaactgtggacgccatgtactgtgca
aaatttgtacatactatccactccctgaagactgcaaatttttcaactctgctttgctac
gatcgtctcttctgtgatattacatattcagtcacttcgtgcacagagaacgaagcaaat
cggtatggcagattcttgtgcgccatgctggaaactgtgatgagatggcattccgagaaa
gccatatttgataaggaatgcagtaattatccaggatttgtgaccaaattccgcgtgagc
aatcaattttctgaagcaaatgatatggtcgggtttgaaaactacagacacgtgtgtcac
aagtggcattataaaatcacaaaggctattgtagtatgtcttgattctaaggattatgtg
caaataagaaattctctgataatattgatcaaaatattgccacactttcctgtcttggca
aaactctctcagattctcgaacgaaaggtggaaaaagtgagagaagaagagcgtggccag
cgtcaagatttgcatgttctggctacatcatacagtggacaactgaaagctaaaactccc
agtatgatacgtgaatcagatttccatcatgtgggtgataaggccgggaaaacgcaagat
gctacaaataatgaaacgaatgaaaaggtcagcaatggagtaacagtgaaagaaaataac
aacggagatactcgaccggaaaaagaaaataaagatcaacgagaaaagcgaagttcttca
agtcaagcgcatcacgaaaactctgagaagtttagaaagaaagaagataataaggatatt
tcagaagtctcaaaagagaaatatatcaaaaaggaagaagtgaaagatgatgaaggatta
gataaaaaggatcgcaaatattataaggacgagcactattatagtagtgctgtagacaat
ttagatcgagatctttccagtgtttcaaatagtagtgctagtacgggtcctttacaagaa
ggtcctgagagagtttcagatgtaaaaagaagaaaagtagagagcgcgccgaagcaggaa
gggagacgcgctgatgctgttcttgataagaaggaacgttccagcaaaggaaaaacgcgt
gacgagcagaaagagctgcgtagagaaaagaaacagggacgaaaaagggatcggacggaa
gaatctatagtaaccactgaacaaaaacggagaaaagatgacgaaagagccaaaaatacg
catcagaacggcgacattcctgaacatagagaaaaacatcatacagtaaggaaaaatctc
catatgcaaaggatcgtcctcatgaacgcgaaggacgcgagagtcgtgataaacacagaa
gaagttcagatccgaaacgaagatgatgtacaacaacggaaaggagctcgacttaacatt
ttttatgctatgtttgatgttgcatgtaataaacgtagaattcgaaataaagcaaaaaaa
atagtcagtaatttgtatattatatgttttaacatccaattttataaaataaattatcta
agtgtccgatatttttttgtatgtgttttaattcagtctttctccaagagtaaaagaaat
cacaatcttcgcgagcgatatgtacggaatgtaatttgcaagatcaataattatatgtgc
aataacgataataaatatattgataaataa
DBGET
integrated database retrieval system
