Pogonomyrmex barbatus (red harvester ant): 105430155
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Entry
105430155 CDS
T04903
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105430155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105430155
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105430155
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105430155
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
105430155
NCBI-ProteinID:
XP_011641837
UniProt:
A0A6I9WGG9
LinkDB
All DBs
Position
Unknown
AA seq
2401 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLSKKNFEDSCREISVLVQWHGLEADRHLLRCLISCVDFSKG
ELSDSSAKDYFQAKLLKQECNSLLSKPSFISTLCFAIDNPLHHQKSLNPSQKFFVNLKKT
LGLTLVQEVAFAIALQHSENAEIRALALEHTQKQLPELIKNYINSETSNKHHEGGLHDSL
PQVLHLILSQALHTANPYNLPLETKEKFLKHLRRDFPRELVPVVLAPFLYPGDEETLQFK
IELNMAVTQMDSNTLVELIMELGYSFTNSVEECRSALTGLGAREISPACVARVLAQMARS
CSNLDDAGGLQTFWGNSTTSQDSNKEKSSDSTISTTWNVEVFIQTLKELQSTLSWNEVIV
KLDHPEFVIKDRQGLNLLITGLKLGLQHQGYPPDVFPVELFYRHWDNVEGQFSLIQQILK
CPDIFCFADYPYHSVTVDVLKAAPEGDSKEGQIWRSLNIVELLLHMAERGLYNPVQEIFK
WPVQHCPDVLVLALLQINPPLTLLRQELFTTLLPIFLGNHPNSAVILHHAWHVNNSKIKT
IIMHAMADWYTRGDHDQTRLSRILDVAQDLKALSALLNSQSFQFVIDLACLASRREYLKL
EKWLTDKIRDHGEVFVTACVKFLQRRCPQVMGPGIKEDPTVPKASQLPQETLTTILACLQ
VCAGSVSQELSELIMTMVQNCSLMLSKSTMNRPPPPGVLRHRGLESFNPATLGNQLFSSK
QVDPLGNLSTSLASMGLSTGLGPPSNSAFNLPGALGPLVSAPGSPSRLMGPSPSPFPMLP
LSSQLHSGPVGTQGPSVLPGGTIGGLGRLGPPAGIEKARMQETSNLFPDMGQNVSKEVED
EANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGIRREREVFNCMLRNLFEEYRFFPQYP
EKELQITAQLFGGIIERGLVNSYMTLGLALRFVLDALKKPEGSKMYYFGITALDRFKNRL
KEYQTYCEHVRTIPHYNEFPPHLVEYIEFGLTGREPSRPQGPKTLADMLTPVTTTYKTMT
TTTITTSTTQAKPSTTPTTSLSARPSMPSVANATNIDTLLVATDKEEKITTPPEALQDKT
AFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDCIKLP
EMNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILQIDIDLKS
LLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKLNL
KFEIEVLCKNLSIDVGELKPIIYLKDPEKLRNLEYQLSHPNKKSETTSNQQQSQGPIEEL
VGSTTQSGTINPQTVPPANTTPSLPAGPPEPRFNYMDISVTGIANISQHITINNQLPLFQ
THPHLKQFIRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEVRMRTAARHM
ARNLTAGMAMITCRDQVLASISSNLKQAFLAALISITPQQKELVEQAANVVATDNMELAC
AFVQKTAIEKAIPEIDKRLLNEIEVRKLARQEGRRYCDPLAKYQAERMPEQIRLKVGGVT
PQQMAVYEEFARNIPGFLPLSERDTQTLFVPKPISEVPLTAFTPNSAVAVATAQQVAYGT
ISNDEVGTMLEKLAAEVEVLLAAMVPAAPPPQNAALHSLLDAIILTRRSRDAGAAMTLLK
KAVEGLLDGPIFTSGTIEAENLAQRYRELHLRILKCLQDQRAYGMQWTNKHVTRCLTECR
EEYRYNFEAVDYLIRSHLISLPQYDVALAQAIETGNALATAFAMQLVQLYLIDERQATHV
TETDLFHTIEIMARMAHHRTPPEGISLYRLTTLVDSLRANHADSGVLVDRAPAGPTAHIH
SGILQVRARDFDDPPGLMEKTEYLLREWVQMHHNPQYARDPTKAFSIFVHQMNIHGILKT
DDLITRFFKLSTQMCVDLCYRALTETAAAPSIMRAKCFHSLDAFVRLVALLVKHSGDATN
THTKINLLNKVLGIVAGVLLQDHEIRGTDFQQLPYHRIFIMLFLELCAPEPVLEAVNFQV
LTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLIDLFKYL
APYLRNAELAKPVTSLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILSA
FPRNMRLPDPFTPNLKVDMLQEIAHAPRVLTNFASTIQPLNFKKELDSYLKARAPVTFLS
ELRSNLQVSQEAGVRYNIQLMNALVLYVGTQAIAFIRSKGHAPNMSTIAHSAHMDIFQNL
AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTILYLFAEANTEAIQEQITRVLLERLIV
NRPHPWGLLITFIELIKNPTYKFWSHEFVHCAPEIEKLFESVARSCMVQKQVPTTETEIP
E
NT seq
7206 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcgaatttg
agtaagaaaaatttcgaggacagctgtcgggagatatcggtcttggtgcagtggcatggt
ctagaggcagaccgacatttgttgcgctgtctgatctcatgcgttgacttttccaagggt
gagctgtcagattcaagtgcaaaagattattttcaagctaagctgttgaaacaggagtgt
aatagcttattgagcaaaccttcttttatatctactttgtgctttgcaatagataatcct
ttacatcatcaaaagtcattaaatccctctcaaaagttttttgtcaatttgaagaaaaca
cttggcctgaccttagtgcaagaggtcgcgtttgcgattgcattacaacattcggaaaac
gctgaaattcgtgctttagccttagagcatactcagaagcagctacctgaattgataaaa
aattacataaactctgagacaagtaacaagcatcacgaaggtggtttgcacgattctttg
cctcaggttcttcatctgatacttagccaagctcttcatactgccaatccatataaccta
cctttggaaacaaaagagaaattcctcaaacatttacgacgtgactttcctcgtgaactg
gtgccagtggtgctagcaccattcctgtatccaggagacgaggaaactctgcaattcaaa
attgaattaaacatggctgtcactcaaatggatagcaacactcttgtagaattgattatg
gaattgggatatagtttcaccaatagtgtagaagaatgtcgatcggcattaacaggttta
ggtgccagagaaatatcgccggcatgcgtcgctcgcgtgttggcgcagatggcacgtagc
tgtagtaatctcgatgatgctggaggcctacaaacgttttggggtaattcgactacctcg
caagattccaacaaggagaaatcatcggatagtaccatttccacaacatggaacgttgaa
gtgtttattcaaacgttaaaagagctacaatctacattatcttggaatgaagttatcgtg
aaattagatcatccagaatttgttattaaggacaggcaaggtttaaatttattgattacg
ggcctcaagttaggtttacagcatcaaggatatccgcctgacgtgttccctgtcgagctc
ttttatcgacactgggataatgttgaaggccaattctctctgattcaacaaattctcaaa
tgtccagatatattttgctttgccgattatccgtaccattcggtaacagtggatgtactg
aaagcagctcccgagggtgatagcaaagaagggcaaatatggcgatcattgaatatagtg
gaattgcttctacatatggctgaaagaggcttatacaatcctgtacaggagatattcaag
tggccagttcagcattgcccggatgtacttgtcttggcattattgcaaataaatccacct
ctcacattattgagacaggaactgttcactacgctattgccgatttttcttggcaatcat
ccgaattctgctgtgatattgcatcatgcgtggcatgtcaataactccaagataaagaca
attataatgcatgccatggcagattggtatacgcgtggtgatcacgatcaaacaagacta
tcgcgaatcttagatgtcgcacaggacttgaaggcactatccgctttacttaattcgcaa
tcgtttcagtttgttattgatcttgcctgtttggcatctcgacgagagtatttgaaatta
gaaaaatggttgacggacaaaattagggaccatggggaagtttttgtcactgcgtgcgta
aaattcttacaacgacgctgtcctcaagttatgggccctggtatcaaggaagatcctaca
gttcccaaggcaagccaactaccacaggaaacgctcactacgatactagcttgcttgcaa
gtttgcgccggaagtgtttctcaagaactctcggagctaataatgacaatggtgcagaat
tgtagtctaatgctgagcaagagcactatgaacagaccaccaccgccgggagttttaaga
catagaggattagaatcgtttaatccggcaactttgggtaaccagttgttttcttcgaaa
caagtggatcctcttggaaatcttagtacaagccttgcttctatgggtcttagcacgggt
cttggacctccaagtaattccgcatttaatttgcctggagcgctaggtcctctcgtttca
gcacctggctctccatcgcgactaatgggaccttcgccaagtccgtttcccatgttgccc
ttatcttcacaattacactcgggtccagttggtactcagggaccgtctgtactccccggt
ggtacaataggtggtttaggacgtcttggaccgccagctggtattgagaaagcgagaatg
caagaaacctctaatttatttccagatatgggacaaaatgtatccaaagaggtcgaggat
gaagctaatagttattttcaacgtatatacaatcatccaccgcatccgactttgtcgatt
gatgaagtacttgatatgttgaaaaaatttcaagactccggtatcagaagggagagagag
gtgtttaattgtatgctgcgaaatctgtttgaagaatacagattttttccacaatatccg
gagaaagaattacaaataacagcacaattattcggtgggattatcgaaagaggacttgtt
aacagttatatgacacttggattagcattacgatttgtccttgatgcacttaaaaaacca
gaaggtagtaaaatgtactatttcggtataacggctttggatcgtttcaagaatcgtttg
aaagaataccagacctactgtgagcacgtcagaacaattccacattacaacgaattccca
cctcatttagtagaatatatagaatttggattgactggaagagaaccatcgagaccgcag
ggtccgaaaactttggcggatatgctaactccagttacaactacatataaaactatgact
acgactactattacaactagcaccacgcaagcgaaaccgtctacgaccccgactacgtct
ctctcggctagaccttctatgccctcggtcgctaatgcaactaatatcgatacgttgctc
gtagcaacggataaggaagagaaaattacgacaccgccagaggccttgcaggataaaact
gcttttatctttaataatctcagccaactgaatctacaacaaaaatgtgacgagattcgc
gaaattgttacggaggaatactggccgtggatggcgcagtatctagtaatgaaacgtgct
agcatagagttgaattttcatgctctgtactcaaattttctggattgtataaaattacct
gaaatgaacaagatggttacgagagaaacattccgaaatattaaggttcttttacggagt
gataaaggaatagctaatttctctgatcggtctttgttaaagaatttaggacattggctc
ggaatgttaacgcttggcaggaataagcctattttacaaatagacatagatttaaaaagt
ttactcgttgaagcatatcacaaaggacaacaagagctactttatgtagtaccctttgtt
gccaaagtgctcgagagttgtgccaagagtcgtgtctttcgtccacccaatccctggact
atggcaattatgaacgttctagccgaattacatcaggaacctgatttgaaattgaactta
aaattcgaaatagaagtactttgcaagaatctaagcatcgatgttggagagttaaaacca
atcatctacttgaaagatcctgaaaaattgcgcaatttagaatatcagttgtcgcatcca
aacaaaaaatcggaaactactagcaatcagcagcagtctcagggacctatagaagagttg
gttgggtccacaacgcagagtggcactatcaatcctcaaactgtgccacccgcaaatact
acaccttcattgccagctggcccaccagagccaagatttaattacatggatatatctgta
acaggcattgctaatatatctcaacacatcactatcaacaatcaattaccattattccaa
acgcatcctcatttgaagcaatttattcgccctgcggttgaaagagctatacaagaatgg
atccatcctgttgttgataggtccattaaaatagcgcttacaaccagcgaacaaattgtc
agaaaagattttgctttggatccagaggaagtgcgaatgcgcacagcagcccgtcatatg
gcgcgtaatctaactgctggcatggctatgattacatgtcgtgatcaggtcctggcatcg
atcagttcgaatttgaaacaagcctttctcgccgcgttaattagtataaccccacaacag
aaggaactcgttgaacaagcggcaaatgtagtagctaccgataatatggaactagcgtgt
gcattcgtacaaaaaacagctatcgaaaaagcgatacccgaaatagacaaacgattactc
aatgaaattgaagtacgaaaacttgctcggcaagaaggaagaagatattgtgatcctctt
gctaagtatcaagctgaaagaatgccggagcagataagactgaaagttggtggagtaaca
cctcaacaaatggctgtgtatgaagaatttgccagaaatattccaggattcctaccactt
tccgaacgggatactcaaacgcttttcgtaccgaaaccgatttctgaagttccactcact
gcatttacaccaaactctgctgtggcggttgctacggcgcaacaagtagcctatggaaca
attagcaacgatgaagtaggtacaatgttggaaaaacttgcagcggaagttgaagtttta
ttggctgctatggtacctgcagcacctccaccgcagaacgctgcccttcatagcctttta
gatgcgattatacttacgagaagatcaagagatgccggtgcagctatgacattattaaag
aaagcggtcgaaggtttactagatgggcctatttttaccagcggcaccattgaagctgaa
aatctagcgcagcgctacagagaactacacttacgtatcttgaaatgtcttcaagatcaa
cgcgcgtacggtatgcaatggaccaacaagcacgtaactcgttgtctaacggagtgccga
gaagaataccgatacaatttcgaagccgtggactacctcataagatctcatttaattagt
cttccacaatacgacgtagctttagcgcaggctatagaaacaggaaacgccttggcaaca
gcattcgctatgcagttggttcaactctatttgattgacgagagacaagcgactcatgtt
accgaaactgacttattccatactattgagataatggctcgaatggcgcatcatcgaacg
ccaccagaaggaatttcactgtatagattgacaacattagtagattcgctacgcgccaat
cacgccgattccggcgtattggtagatcgagctccagcagggcctacggcacatattcat
tccggaatcctgcaggtgagagctcgtgattttgatgatccacccggattaatggagaaa
acggaatatctgttacgtgaatgggtgcagatgcaccacaatccacagtacgcgcgagat
cccacgaaagcgtttagcatatttgtacatcaaatgaatatccatgggatcctgaaaacc
gacgatctcatcacgagattcttcaagctaagcacacagatgtgcgtcgatctttgctac
cgagctctcacggaaactgcagcggctccatcgatcatgcgtgcaaaatgcttccactca
ttggacgcgttcgtacgtctagtagcacttctagtaaagcattcaggtgatgctactaac
acacataccaagataaatctattaaacaaggtgcttggtatcgtggccggtgtgctgtta
caagatcacgaaatacgcggcaccgatttccaacagttaccatatcacaggatctttatt
atgctgtttttggagttgtgcgcgcccgagccggttttggaggccgtgaattttcaagtc
ctgaccgccttttgtcacaccctgcacatcctacgaccagcaaaggcatctggtttttgc
tatgcatggttggagttggtctctcaccgtgtcttcatcggtcgtatgttagccattaca
ccgcaacaaaagtgctgggggatgtatgcgcagcttctcatcgatttgttcaaatatctt
gcgccataccttcgtaacgcggagcttgcaaagcctgtgacaagtctctacaaaggaacg
cttcgtgtgttgctcgtgctgcttcacgatttccccgagttcctttgcgattatcattat
ggattttgcgacgtgataccaccgaattgtatacagatgagaaatctgatcttgagtgca
ttcccgagaaacatgcgtctgcctgatccatttacaccaaatttgaaagtggacatgctg
caggagatagcgcatgccccgcgtgttcttaccaattttgcatctacgatacagccatta
aatttcaagaaagaactcgattcctatctaaaagctcgtgcgccggtcaccttcctatcc
gagcttcgcagcaatctgcaagtgtcacaagaggctggagtgcgttataatattcaactg
atgaatgctctagtgctctatgtgggaacacaggcaatagcattcattcgcagcaagggt
catgctcctaacatgtctactatcgcgcactctgcacacatggatatctttcaaaacctt
gccgtcgatctcgacaccgagggtcgttatctgtttctgaacgccatagcaaatcagttg
cggtaccctaacagtcatacgcattactttagttgtacgattctctatttgttcgctgaa
gcgaatacggaagcgatacaggagcagatcactagagttcttctggaaagactgattgta
aacagaccacatccatggggactcctcattaccttcatcgaactgatcaaaaatccgacg
tataaattctggtcacacgagtttgtacattgtgcgccggaaattgaaaaattgttcgag
tccgtagctagatcgtgtatggtgcagaaacaggtgcccacgacggagacggagattcca
gagtga
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integrated database retrieval system
