Limihaloglobus sulfuriphilus: SMSP2_01705
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Entry
SMSP2_01705 CDS
T04749
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pbas
Limihaloglobus sulfuriphilus
Pathway
pbas03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SMSP2_01705 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbas03021
]
SMSP2_01705 (rpoB)
03400 DNA repair and recombination proteins [BR:
pbas03400
]
SMSP2_01705 (rpoB)
Enzymes [BR:
pbas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SMSP2_01705 (rpoB)
Transcription machinery [BR:
pbas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SMSP2_01705 (rpoB)
DNA repair and recombination proteins [BR:
pbas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SMSP2_01705 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AQQ71334
UniProt:
A0A1Q2MFA7
LinkDB
All DBs
Position
complement(2210613..2214374)
Genome browser
AA seq
1253 aa
AA seq
DB search
MGTRPVRNFGKIGDAVPVPDLTKVQRDAYSSFLQLDIPAHMREDKGLEALFRESFPIKKS
DETMQLDYVKYELERPRFTPLECKELSLTYGHPLKVTCRFTIKETGEVQEQSVYIGDVPI
MRGGGTFIINGAERVIVNQLHRSPGIDFRVDSKEGDRILHGAKIVPERGSWIELSVTKKD
AMIIKIDQSNKIPATTFLRAMDEKYGETAEIIRLFYETQIVPVEELKPTMWTVGQVIDTE
TGEILVEAGSQLGDSIAQIQSSELETLEVVHETNDPLIFNTLAEDDASNHEQALVKIYSR
LRPGNPLNAEKAKELFFEKFYDESRYRLGRVGRFRLNRKFNEDIDESLMTLEPRDFVNTL
RYILDLRSPIKKAYIDDIDHLGNRRLRTIDELAADEIRKGLLKLRRTIEERMNIKEPDQI
GKVSDIINSKAVSSSIEYFFGRGELSQVVDQTNILSQLTHERRLSALGPGGLNRKRAGFE
VRDVHISHYGRICPIETPEGTNIGLIASLGIFSGVDEYGFLITPYRKVEDSQITGQVDYL
RADEEMALVFTPPSSVDPENGKLKEGLLLARERGELTQTTREDVNYVDISPKQTVGISAS
LIPFLEHDDANRALMGSNMMRQAVPLLTTEAPLVGTGMESEVAKNSSMVLRAAEDGVVTY
VDAMKIVVDDREEYELQKFRGLNERTCLNQQPLVVKGQNVKKGDIIADGGATNNGRLSLG
KNVLVAFVPFDGYNFEDAILISENLVKDDAFTSVHIDSFTIEIRETKLGREEFTCDIPNV
SERMLKNLDARGIVREGTRVGPNDILVGKISPKSKTELTPEEKLLHAIFGRAGEDVKNDS
LIMPSGHEGVVIETKHFKRKASLSAEERAEQERDLEIYKESMNRRQIRIFRQMISSINDK
LGIVIVDPTSKQKVGTSEYDEVILEQIETFTLDWVEDEKDRNKVKDLVNIYWPRIQEVQF
EMERYVDSVKRGDELPSGVLEMVKVYIATKRPLSVGDKMAGRHGNKGVIARVLQQEDMPF
LEDGTPCEIVLNPLGVPSRMNVGQILETHLGWAAKVLGFDAITSVFDGASEQDVVNVINE
ANQSVLERKEYCEKNNIAPDKDDIYATVPETLKTQLYDGRTGEEFEQRATVGYMYMLKLH
HLVDEKIHARSTGPYSLITQQPLGGKARAGGQRFGEMEVWALEAYGAAYTLQELLTVKSD
DMEGRSKIYESMVKGANTLEAGTPISFDVLCSEIKGLGLNISLEKNNQGNAPI
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgggtacacggccagtaaggaattttggtaagatcggagacgccgtcccggtaccggac
ctgacaaaggttcagcgggatgcgtacagcagttttctgcagcttgatattcctgcgcac
atgcgagaagacaaggggctcgaggctcttttccgtgaaagctttcccataaaaaaatct
gatgaaacaatgcagctcgactatgtgaagtacgagcttgaacggccgcggtttacacct
cttgagtgcaaagagttgagtcttacatacggccatccgcttaaggtaacctgccgtttt
acgatcaaggaaaccggcgaggtgcaggagcagtccgtttatatcggcgatgtgccgatt
atgcgcggcggcggaacatttatcataaacggtgccgagcgtgtaattgtgaatcagctt
cacagaagtcccggtatcgattttcgtgttgacagcaaagagggcgaccgtatccttcac
ggggcaaagattgttcccgaacgaggcagctggatcgagcttagcgtcacgaaaaaagac
gcgatgattatcaaaatcgaccagtccaataagatccccgctactacgtttctgcgtgca
atggatgaaaaatacggagaaaccgccgaaattatacggcttttctacgaaacgcagatt
gttcccgttgaggagctcaagccgacaatgtggaccgtcggccaggtcatagacaccgaa
accggtgaaatacttgttgaagcaggctctcagcttggagattcaatcgctcagattcag
tccagcgagcttgaaactttagaggttgtgcatgagacaaacgatccgttaattttcaac
acccttgcagaagatgatgcgtcaaaccatgaacaggcactcgtaaaaatctattcgagg
ctccgtccgggtaatcctcttaatgcggaaaaagcaaaagagctgtttttcgaaaaattc
tacgacgaaagccgttaccgccttggcagagtgggccgtttccgtcttaacaggaaattt
aatgaggacattgatgagtctcttatgactcttgagcctcgcgattttgtcaataccctg
aggtacattctcgacctgcgttcacccattaaaaaagcatacattgacgatatcgaccat
ctgggcaacaggcgtctgcgtacaatcgatgagcttgctgccgacgaaatccgcaagggt
ctgctaaaactccgcaggacaattgaagaacggatgaatatcaaggagcctgaccagatc
ggcaaggtttccgacattataaattcaaaggctgtttcgagcagcatagaatatttcttc
ggccgcggcgagctgagccaggttgttgaccagacaaatatcctcagtcagcttacccat
gaaagaaggctctcagcgctgggccccggcggtttgaacagaaagcgtgcaggctttgaa
gttcgtgacgttcatatcagtcactacggccgtatatgcccgatcgaaacacctgaaggt
acaaacattggacttatcgcgtcactgggtattttctccggtgttgatgaatatggtttt
ctaattactccctaccgcaaggttgaagactcacagataaccggtcaggtagattatctc
cgcgcagatgaagagatggcgctggtgttcactccgccaagttcggttgaccccgaaaac
ggcaagctcaaagaaggtctgcttcttgcgcgtgaaagaggcgagctgactcagacaacc
cgtgaggatgtcaactatgtagatatctcgcccaagcagactgttggtatatctgcttcg
ctgattccgttccttgaacacgatgacgcaaaccgtgcgcttatgggttctaacatgatg
cgccaggcagttcctctgctgacaaccgaggcgcctcttgtaggcaccggaatggagtct
gaggtggccaaaaactccagtatggtactcagggccgccgaggacggcgttgtaacctat
gttgacgcgatgaagatcgttgtcgatgaccgtgaagagtatgaattgcagaagttccgc
ggcctcaatgaacgtacctgcctcaaccagcagccgcttgttgtaaaaggtcagaatgtc
aaaaaaggcgacataatcgctgacggcggtgctaccaacaacggcaggctctcgcttggt
aagaacgttcttgtggcgtttgtgcctttcgacggctacaactttgaggatgcgatcctt
atcagcgaaaacctggttaaggacgacgcgtttacaagtgtccatattgactcattcaca
atagagatacgtgagaccaaactcggccgcgaagagtttacatgcgatatacctaacgta
agcgagagaatgctcaagaatcttgacgcacgcggaattgtccgtgaaggaacacgtgtg
ggccccaatgatattcttgtcggcaaaatttcgcctaagagcaagacagagctcactccg
gaagaaaaactgcttcacgctattttcggccgcgccggcgaagacgtcaaaaatgattcg
ctgataatgcccagcggccacgaaggcgttgttattgagacaaagcatttcaaacgcaag
gcgtctctctccgcagaagaaagagcggagcaggaacgcgaccttgaaatatacaaagag
tcgatgaaccggcggcagatacgtattttccgccagatgatatcatcgattaacgataag
ctgggtatcgtcattgtcgatccaacctcaaagcagaaggttggaacgagtgaatatgac
gaggtaatactcgagcagattgaaaccttcaccttagattgggttgaagacgaaaaagac
cgtaataaagtaaaagatctggtcaatatttactggcctcgtatccaggaagtccagttc
gagatggagcggtatgtcgattcggtcaagcgaggcgacgagctgcccagcggcgtactc
gagatggttaaggtttatatcgcgaccaaacgtccgctctctgtcggtgataagatggcc
ggacgccacggtaacaagggtgttatcgcacgcgtgctgcagcaggaagatatgccgttc
ctcgaggacgggactccgtgcgaaatcgttcttaatcctcttggtgttcccagtcgtatg
aacgtcggccagatactcgaaacccacctgggctgggcggctaaggttctcggatttgac
gctattacaagtgtttttgacggtgcttcagaacaggacgttgtcaatgtgataaacgaa
gccaatcaaagcgttcttgagcgtaaagaatattgcgaaaagaacaacatcgctcctgat
aaggacgatatttacgctactgtaccggaaacactcaagactcaactttatgacggccgc
accggcgaggagtttgaacagcgtgcaactgtaggctatatgtacatgctcaagctgcat
catcttgttgatgagaaaatccatgcccgttcaacaggcccatacagccttataacccag
cagccgctgggcggcaaagcccgggccggcggacagaggtttggagagatggaagtctgg
gcgctcgaggcttacggcgctgcatacaccctccaggagcttttgaccgtcaagagtgac
gatatggaaggacgttcaaagatttacgagtctatggttaagggagccaatactctcgag
gccggaacgccaatttcgttcgacgtactctgcagcgagatcaaaggtcttggcttgaat
attagtcttgaaaaaaataatcagggtaacgcccccatctaa
DBGET
integrated database retrieval system
