KEGG   Pseudomonas brassicacearum DF41: CD58_02815
Entry
CD58_02815        CDS       T03174                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
pbc  Pseudomonas brassicacearum DF41
Pathway
pbc02024  Quorum sensing
pbc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pbc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CD58_02815
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CD58_02815
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pbc03019]
    CD58_02815
   03036 Chromosome and associated proteins [BR:pbc03036]
    CD58_02815
Messenger RNA biogenesis [BR:pbc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CD58_02815
Chromosome and associated proteins [BR:pbc03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CD58_02815
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AHL31892
UniProt: A0AAQ0TEQ3
LinkDB
Position
633785..634045
AA seq 86 aa
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSATETEGGDAEPGNA
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacttgaacactttacgtaaagagaaagtt
ggggtgtccatctatctggtcaacgggatcaaactgcaaggcacgatcgagtctttcgac
cagttcgtcatccttctgaaaaacaccgtcagccagatggtctacaagcacgcgatctcg
acagtcgtgccagttcgtccaattcgtctgcctagcgcaaccgaaaccgaaggcggtgac
gctgagccgggtaacgcctga

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