Plasmodium berghei: PBANKA_0939900
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Entry
PBANKA_0939900 CDS
T01111
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4, putative
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
pbe
Plasmodium berghei
Pathway
pbe03018
RNA degradation
pbe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PBANKA_0939900
09123 Folding, sorting and degradation
03018 RNA degradation
PBANKA_0939900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbe03019
]
PBANKA_0939900
03041 Spliceosome [BR:
pbe03041
]
PBANKA_0939900
Messenger RNA biogenesis [BR:
pbe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PBANKA_0939900
mRNA degradation factors
5'-3' decay
Lsm complex
PBANKA_0939900
Spliceosome [BR:
pbe03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PBANKA_0939900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7957
SM-ATX
Motif
Other DBs
NCBI-GeneID:
55149859
NCBI-ProteinID:
XP_034421751
LinkDB
All DBs
Position
9:complement(1450437..1451340)
Genome browser
AA seq
132 aa
AA seq
DB search
MVFPLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISEC
YVRGSSVKYIRVQDQAIENAIEETAEQKSRNAGRGRGGVRGSGRNRGRGFGRGTDKRGGK
AGNIRTTGRGGH
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttcctttaactttgttaaaatgctctcaaaatcaaccagtgatggttgagcta
aagaatggagaaacttatagtggatttttagtattttgtgatcgatttatgaatttacat
atgaaaaatataatatgcacatcaaaagatggagataaattttggaaaatatctgagtgt
tatgttagagggagtagtgtgaaatatattcgagtacaagatcaagctatagaaaacgcc
attgaggaaacggctgagcaaaaatcgagaaatgccggaagaggtcgaggtggcgtaagg
ggaagtggacgcaatagaggccgagggtttggtaggggaacagacaaaagaggtggaaaa
gctggaaatataagaacaactgggcgagggggacattaa
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