Pseudomonas beijingensis: PSH84_06060
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Entry
PSH84_06060 CDS
T10327
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pbej Pseudomonas beijingensis
Pathway
pbej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSH84_06060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbej03019
]
PSH84_06060
03400 DNA repair and recombination proteins [BR:
pbej03400
]
PSH84_06060
Enzymes [BR:
pbej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSH84_06060
Messenger RNA biogenesis [BR:
pbej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSH84_06060
DNA repair and recombination proteins [BR:
pbej03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSH84_06060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
EccE
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
WLI46459
LinkDB
All DBs
Position
1305185..1307113
Genome browser
AA seq
642 aa
AA seq
DB search
MHSTLEQVFGYPQFRPGQEAAIGAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS
PLLALMQDQLAFLKRHGIAAASIDSAQSRDETNDAMARARSGELKILMISVERLKNERFR
NFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQHQFNIPQVLLLTATATPKVIADM
QAKFAIAAADVVTTGFYRPNLNLLVEPVRGADKRERLVQWLGERTGQPSIVYVTLQRTAE
QIAEHLGRHGIEAEAYHAGLPHDQREAIQRRFMGGQSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELAGIRCVLDELK
AAAADGQWEFLLGPLADQSNVRQLPLKTLLVQLELRRLIAPRYAYFAEYRFKYLTEPHEL
LERFEGERRDFVAAIIQTSSRARAWATVDFDGMYQQYHAERNRVVKALDYFQEKGWIELE
SKQMTEVYSVLEADLDVPVLSAELHAYFSRHEQGEIARIHAMLELFATDRCLGHRLAQYF
GDDNAPRPCGHCSVCHGHVARLPEPPALPALVDKNFEALCGDFIHKHEQHSGNVPSAERL
TRFLCGISVPLFTRLKARKIPGYAALEAYPYAEVRQWAQAHL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcacagcaccctggaacaggttttcggttatccacagtttcgtcccggtcaggaggca
gccattggcgctgtactggccggtcggtcggcggcggccatcttccccaccggctcgggc
aagtccctgtgttatcaattgccagccttactcctgccgcacctgaccctggtggtttcg
ccactgctggcgttgatgcaggaccagttggcgttcctcaagcgccacggcatcgcggcg
gccagtatcgattcggcccagagccgtgacgaaaccaacgacgccatggcgcgggcccgt
tcgggtgagctgaaaatcctgatgatttccgtggagcgcctgaagaacgagcgttttcgc
aatttcctgcagcaggtgccgatctcgttgttggtggtggacgaggcccactgtatttcg
gaatgggggcataacttccgacctgactacctcaagctccccgattaccagcaccagttc
aacattccccaggtattgctgctgacggctaccgcgacacccaaggtcatcgctgacatg
caggcgaaattcgccattgccgccgccgatgtggtgacgaccggcttctaccgaccgaac
ctcaatctgctggtcgagcccgtgcggggtgccgataagcgcgaacggctggtgcagtgg
ttgggcgagcgtaccgggcagccgagcatcgtctacgtcaccttgcagcgaaccgccgag
cagatcgccgaacacctgggccggcacggtatcgaggccgaggcctatcacgccggtttg
ccccatgaccaacgtgaagccatccagcggcgattcatgggtgggcaatccaattgcatc
gtcgcgaccatcgctttcggcatgggcatcgacaagagcgacattcgcaacgtcgtgcac
ttcgacctgcccaagtccatcgaaaactacagccaggagatcggccgtgccggacgggat
gggcagccgtccgattgcctggtgctggccaaccgcgacagcctcaatgtgctggaaaat
tttgtgtatggcgatacgccggagcttgcaggtattcgttgcgtgctcgatgaactgaag
gctgccgccgccgatgggcaatgggagttcttgctgggcccgctggcggatcagagcaac
gtccggcaattgccgctcaagacgttgttggtccagttggagttgcgccggttgatcgcg
ccgcgctatgcctatttcgcggagtatcgcttcaagtacctgaccgagccgcacgagctg
ctggagcgcttcgaaggtgagcgaagggactttgtcgcggccatcatccagacctccagt
cgcgcccgggcctgggccacggtggatttcgatgggatgtaccagcagtatcacgctgag
cgtaatcgcgtggtcaaggcgctggattatttccaggaaaaaggctggatcgagctggaa
agcaagcagatgaccgaggtgtacagcgtgctggaagcggacctggatgtgccggtcttg
agcgccgagctacatgcttatttctctcggcatgaacagggtgaaatcgcgcggatccac
gccatgctcgaattgttcgccaccgaccgttgcctgggtcatcgcttggcgcagtatttc
ggtgacgacaatgcgccacgcccgtgtggccattgttcggtgtgccatgggcatgtcgct
cgcctgccggagccgcctgcgttgccggcgcttgtggataaaaatttcgaggcgctgtgt
ggcgactttatccacaagcatgagcagcacagcggcaacgtgccgtctgccgagcgcctg
actcgcttcctgtgcgggatcagcgtgccgctgtttacccgattgaaggcgcggaagatc
cctgggtatgccgcactggaagcgtatccatacgctgaggttcgccaatgggcccaagcg
cacctgtga
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