Pseudomonas benzopyrenica: V6W80_21805
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Entry
V6W80_21805 CDS
T10550
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pben Pseudomonas benzopyrenica
Pathway
pben03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pben00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
V6W80_21805 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pben03021
]
V6W80_21805 (rpoB)
03400 DNA repair and recombination proteins [BR:
pben03400
]
V6W80_21805 (rpoB)
Enzymes [BR:
pben01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
V6W80_21805 (rpoB)
Transcription machinery [BR:
pben03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
V6W80_21805 (rpoB)
DNA repair and recombination proteins [BR:
pben03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
V6W80_21805 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
RickCE_cat
Motif
Other DBs
NCBI-ProteinID:
WWM66320
UniProt:
A0ABZ2FNW2
LinkDB
All DBs
Position
complement(4600317..4604390)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPHVMDVPYLLAIQLDSYREFLQAGAGKDQFRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDRESSNKAIKD
IKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALGYSTEEVLDAFYDTNVFHIKGET
LNLELVPQRLRGDIASFDIKDETGKVIVEQGRRVTARHINQLEKSGITELEVPFDYVIGR
TTAKAIVHPSTGEIIAECNTELTLDMLAKMAKANVVRLETLYTNDIDCGPFISDTLKIDS
TGNQLEALVEIYRMMRPGEPPTKEAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRDAIE
GSGVLSREDIVDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRMVK
DGVATDEIVFLSAIEEANHVIAQASAGLDENNRLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSDKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVNDAEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
QVAKFDILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITSDIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKSQLDE
IRKDLNEEFRIVEGATFERLRQALVGQVAEGGPAVKKGAVITDEYLNGLERGQWFKLRMA
EDAHNEQLEKAQAYLSDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPYDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINVMIEEQRKVAELRSFLHEIYNEIGGRQEKLDDLSDQEVLDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMRLYDGRTGNAFERTTTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccgcac
gtcatggacgtgccctatttgctggctatccaactggattcgtaccgcgaattcctgcag
gcgggcgcaggcaaagaccagttccgcgatatcggcctgcatgcggccttcaagtccgtt
ttcccgattatcagctattccggcaatgcggccctggaatacgtcggctatcgcctgggc
gagccggctttcgatgtgaaggaatgcgtcctgcgcggcgtgaccttcgccgtcccgctg
cgggtcaaggttcgcctgatcatcttcgaccgcgagtcgtcgaacaaggcgatcaaggac
atcaaggagcaggaagtctacatgggggaaatccccctgatgaccgagaacggtaccttc
atcatcaacggtaccgagcgtgtcatcgtgtcccagctgcaccgcagcccgggcgtgttc
ttcgaccacgaccgcggcaagacccacagctcgggcaagctgctgtactcggcgcgcatc
attccctaccgcggctcctggctggacttcgagttcgaccccaaggacgccgtcttcgtg
cgtatcgaccgccgccgcaagctgccggcctcggttctgctgcgcgcgctcggctacagc
accgaagaagtgctggacgccttctatgacaccaacgtcttccacatcaagggcgagacc
ctgaacctggaactggtgccccagcgcctgcgtggtgacatcgccagcttcgacatcaag
gacgaaaccggcaaggtgatcgtggagcagggccgtcgcgtgaccgctcgccacatcaac
cagttggaaaagtccggtatcaccgagctggaagtgcccttcgattacgtcattggccgt
accaccgccaaggccatcgtgcacccgtccaccggcgagatcatcgccgagtgcaacacc
gagctgaccctggacatgctggccaagatggccaaggccaatgtcgtgcggctcgagacg
ctgtacaccaacgacatcgactgtggtccgttcatctccgataccctgaagatcgactcc
accggcaaccagctggaagccctggtcgagatctatcggatgatgcgtcctggcgagccg
ccgaccaaggaagctgccgagaccctgttcaacaacctgttcttcagcgccgagcgttac
gacctgtccgccgtcggccgcatgaagttcaaccgccgtatcggtcgcgatgccatcgaa
ggctcgggcgtgctgagccgcgaagacatcgtcgacgtgctcaagaccctggtcgacatc
cgtaacggcaagggtatcgtcgacgacatcgaccacctgggtaaccgtcgtgtccgttgc
gtcggtgaaatggccgagaaccagttccgcgtgggcctggtgcgggtggagcgtgccgtc
aaggaacgcctgtccatggccgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccggtggccgccgcgatcaaggaattcttcggttccagccagctgtcccagttcatg
gaccagaacaacccgctgtcggagatcacccacaagcgccgcgtctccgcactcggcccg
ggcggtctgacccgtgagcgcgccggcttcgaagtccgcgacgtacacccgacgcactac
ggccgggtctgcccgatcgaaacgccggaaggtccgaacatcggcctgatcaactccctg
gctgcctatgcccgcaccaaccagtacggcttcctcgaaagcccgtaccgcatggtcaag
gacggcgtggctaccgacgagatcgtcttcctgtcggccatcgaagaagccaaccacgtc
atcgcccaggcctccgccggcctggacgagaacaaccggctgatcgatgagctggtggcc
gtgcgccacctgaacgaattcaccgtcaaggcgcccgaagacgtcaccctgatggacgtt
tcgcccaagcaggtcgtctccgtcgccgcctcgctgattccgttcctcgagcacgacgac
gccaaccgcgcgctgatgggttccaacatgcagcgtcaggccgtgccgaccctgcgttcg
gacaagccgctggtgggtaccggcatggagcgcaacgtcgcccgtgactccggcgtctgc
gtcgtggcccgtcgtggtggcgtgatcgactccgtcgatgccagccgtatcgtggtgcgt
gtcaacgatgccgaagtcgaaaccggtgaagccggtgtcgacatctacaacctgaccaag
tacacccgttccaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgat
caggtggccaagttcgacatcctggccgatggcccctcgaccgacatgggcgagctggca
ctgggtcagaacatgcgcgtggccttcatgccctggaacggcttcaacttcgaagactcc
atctgtctgtcggagcgtgtggtccaggaagatcgcttcaccaccatccacatccaggaa
ctgacctgtgtggcccgtgacaccaagctcggcccggaggagatcacctccgacatcccg
aacgtgggtgaggctgcgctgaacaagctggacgaggccggtatcgtctacgtcggtgcc
gaggtcggcgccggtgacatcctggtcggcaaggtcacgcccaagggcgaaacccagctg
accccggaagagaagctgctgcgcgccatcttcggcgagaaggccagcgacgtgaaggac
acctccctgcgtgtgcccactggcaccaagggtaccgtcatcgacgtccaggtcttcacc
cgtgacggcgtcgagcgcgactcccgcgccctggccatcgagaagtcccagctcgacgag
atccgcaaggatctgaacgaagagttccgcatcgtcgaaggcgcgaccttcgagcgtctg
cgtcaggccctggtcggtcaggttgccgaaggcggtccggcggtcaagaagggtgccgtc
atcaccgacgagtacctgaacggcctggagcgcggtcagtggttcaagctgcgcatggcg
gaagatgctcacaacgagcagctggaaaaggcccaggcctacctgtccgaccgtcgccag
ctgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggcg
ccgggcgtactgaagatcgttaaggtctacctcgccatcaagcgccgcatccagccgggc
gacaagatggctggtcgtcacggtaacaagggtgtggtctcggtgatcatgccggtcgaa
gacatgccctacgacgccaacggcacgccggtggacatcgtgctgaacccgctgggcgta
ccctcgcggatgaacgtcggtcagatcctcgaaacccacctgggcctcgcggccaagggc
ctgggcgagaagatcaacgtgatgatcgaagagcagcgcaaggttgcagagctgcgcagc
ttcctgcacgagatctacaacgagatcggtggccgtcaggagaagctcgacgacctgagc
gatcaggaagtcctcgacctggcgaagaacctgcgcggcggtgttcccatggctaccccg
gtgttcgacggtgccaaggaaagcgagatcaaggctatgctgaagctggccgatctgccg
gagagcggccagatgcgtctgtacgacggccgcactggcaatgccttcgagcgcaccacc
accgttggctacatgtacatgctcaagctgaaccacctggtggacgacaagatgcacgcc
cgttccaccggttcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaggcctatggcgcggcttac
accctgcaggaaatgctgacggtgaagtcggacgatgtgaacggccggaccaagatgtac
aagaacatcgtggacggagatcaccgcatggaggccggcatgcccgagtccttcaacgta
ctgatcaaggaaatccgttcgctcggcatcgatatcgaactggaaaccgaataa
DBGET
integrated database retrieval system
